Variant report
| Variant | rs17867290 |
|---|---|
| Chromosome Location | chr4:118298753-118298754 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10005949 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10012436 | 1.00[ASN][1000 genomes] |
| rs10027838 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10028318 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10034473 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10471009 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13103240 | 0.87[ASN][1000 genomes] |
| rs13119124 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13129266 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13137263 | 1.00[CHB][hapmap] |
| rs13138792 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17861816 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17865009 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17865320 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17865878 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17866198 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17867182 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17867291 | 0.87[ASN][1000 genomes] |
| rs17869432 | 1.00[CEU][hapmap] |
| rs28610484 | 1.00[ASN][1000 genomes] |
| rs4834611 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4834613 | 0.87[ASN][1000 genomes] |
| rs6852103 | 0.87[ASN][1000 genomes] |
| rs9307435 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004858 | chr4:118248984-118382051 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv427692 | chr4:118262899-118437573 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv879825 | chr4:118292314-118333367 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| 4 | nsv879826 | chr4:118292314-118351381 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv470068 | chr4:118296960-118327792 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:118282000-118302000 | Weak transcription | HMEC | breast |
| 2 | chr4:118295800-118306200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
