Variant report
| Variant | rs6852103 |
|---|---|
| Chromosome Location | chr4:118334649-118334650 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NDST3-10 | chr4:118334618-118335435 | NONHSAT097958 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10005949 | 0.87[ASN][1000 genomes] |
| rs10012436 | 0.87[ASN][1000 genomes] |
| rs10027838 | 0.87[ASN][1000 genomes] |
| rs10028318 | 1.00[ASN][1000 genomes] |
| rs10034473 | 0.87[ASN][1000 genomes] |
| rs10471009 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs11940815 | 0.87[ASN][1000 genomes] |
| rs13103240 | 1.00[ASN][1000 genomes] |
| rs13109157 | 0.87[ASN][1000 genomes] |
| rs13113670 | 0.87[ASN][1000 genomes] |
| rs13119124 | 0.87[ASN][1000 genomes] |
| rs13129266 | 0.87[ASN][1000 genomes] |
| rs13132223 | 0.87[ASN][1000 genomes] |
| rs13137263 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs13138792 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs13152662 | 0.87[ASN][1000 genomes] |
| rs17861816 | 0.87[ASN][1000 genomes] |
| rs17861859 | 0.87[ASN][1000 genomes] |
| rs17861860 | 0.87[ASN][1000 genomes] |
| rs17865009 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs17865320 | 0.87[ASN][1000 genomes] |
| rs17865878 | 0.87[ASN][1000 genomes] |
| rs17866198 | 0.87[ASN][1000 genomes] |
| rs17866920 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17867182 | 0.87[ASN][1000 genomes] |
| rs17867290 | 0.87[ASN][1000 genomes] |
| rs17867291 | 1.00[ASN][1000 genomes] |
| rs28610484 | 0.87[ASN][1000 genomes] |
| rs4339281 | 0.87[ASN][1000 genomes] |
| rs4501289 | 0.87[ASN][1000 genomes] |
| rs4834611 | 0.87[ASN][1000 genomes] |
| rs4834613 | 1.00[ASN][1000 genomes] |
| rs6828740 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6830551 | 1.00[CEU][hapmap] |
| rs9307435 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004858 | chr4:118248984-118382051 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv427692 | chr4:118262899-118437573 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv879826 | chr4:118292314-118351381 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
