Variant report

Variant	rs17867832
Chromosome Location	chr7:126996837-126996838
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10230771	0.80[CHB][hapmap]
rs12706790	0.80[CHB][hapmap]
rs17862354	1.00[YRI][hapmap]
rs17862366	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17864189	0.80[CHB][hapmap]
rs17864190	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17865997	0.81[CHB][hapmap]
rs17867833	0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17869261	0.81[CHB][hapmap]
rs17869284	0.81[CHB][hapmap]
rs6954165	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6957728	0.81[CHB][hapmap]
rs6971514	0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7809156	0.80[CHB][hapmap]
rs7809187	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526043	chr7:126985158-126998210	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017145	chr7:126995304-127015459	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126984400-127000800	Weak transcription	HSMMtube	muscle
2	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
3	chr7:126988200-127001000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:126988400-126997000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:126988400-126997000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:126988400-126997000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:126988400-126997000	Weak transcription	Osteobl	bone
8	chr7:126988400-126998800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:126988400-126998800	Weak transcription	Placenta	Placenta
10	chr7:126988400-126999200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:126988400-126999200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:126988400-126999800	Weak transcription	Primary T cells from cord blood	blood
13	chr7:126988400-127000000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:126988400-127000000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:126988400-127000000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:126988400-127000200	Weak transcription	Adipose Nuclei	Adipose
17	chr7:126988400-127000400	Weak transcription	Hela-S3	cervix
18	chr7:126988400-127000600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:126988400-127000600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:126988400-127000600	Weak transcription	Fetal Intestine Large	intestine
21	chr7:126988400-127000800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:126988400-127000800	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:126988400-127000800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr7:126988400-127000800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:126988400-127001000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:126988400-127001000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:126988400-127001000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:126988400-127001000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:126988400-127001000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:126988400-127001000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:126988400-127001000	Weak transcription	Aorta	Aorta
32	chr7:126988400-127001000	Weak transcription	Brain Angular Gyrus	brain
33	chr7:126988400-127001000	Weak transcription	Esophagus	oesophagus
34	chr7:126988400-127001000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:126988400-127001000	Weak transcription	Fetal Stomach	stomach
36	chr7:126988400-127001000	Weak transcription	Left Ventricle	heart
37	chr7:126988400-127001000	Weak transcription	Lung	lung
38	chr7:126988400-127001000	Weak transcription	Right Ventricle	heart
39	chr7:126988400-127001000	Weak transcription	Thymus	Thymus
40	chr7:126988400-127001000	Weak transcription	NH-A	brain
41	chr7:126988400-127001000	Weak transcription	NHLF	lung
42	chr7:126988400-127001200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:126988400-127002200	Weak transcription	Fetal Heart	heart
44	chr7:126988400-127004400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr7:126988400-127006400	Weak transcription	Psoas Muscle	Psoas
46	chr7:126988400-127012600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:126988400-127013000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:126988400-127013000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr7:126988400-127013200	Weak transcription	NHEK	skin
50	chr7:126988400-127013400	Weak transcription	Rectal Smooth Muscle	rectum

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