Variant report

Variant rs17875384
Chromosome Location chr6:29694777-29694778
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29691200-29695000 Transcr. at gene 5' and 3' Primary T helper cells fromperipheralblood blood
2 chr6:29691200-29695400 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
3 chr6:29692000-29695000 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
4 chr6:29692200-29701800 Weak transcription HMEC breast
5 chr6:29692200-29715800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr6:29692400-29695600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr6:29692400-29715800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr6:29692600-29696200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr6:29692600-29696400 Genic enhancers Spleen Spleen
10 chr6:29692600-29697400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr6:29692800-29696000 Strong transcription Primary hematopoietic stem cells blood
12 chr6:29692800-29712000 Weak transcription H9 Cell Line embryonic stem cell
13 chr6:29693200-29695200 Weak transcription Brain Angular Gyrus brain
14 chr6:29693200-29696200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr6:29693200-29711400 Weak transcription Pancreas Pancrea
16 chr6:29693400-29694800 Strong transcription Fetal Intestine Small intestine
17 chr6:29693400-29695000 Genic enhancers Primary B cells from cord blood blood
18 chr6:29693400-29696000 Strong transcription Right Ventricle heart
19 chr6:29693400-29697000 Weak transcription Fetal Thymus thymus
20 chr6:29693400-29700000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr6:29693400-29715600 Weak transcription Esophagus oesophagus
22 chr6:29693600-29696200 Strong transcription Breast Myoepithelial Primary Cells Breast
23 chr6:29693600-29696800 Weak transcription Fetal Intestine Large intestine
24 chr6:29693600-29697600 Weak transcription Brain Substantia Nigra brain
25 chr6:29693600-29715600 Weak transcription NHLF lung
26 chr6:29693800-29696000 Strong transcription Ovary ovary
27 chr6:29693800-29696400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr6:29693800-29705400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr6:29693800-29715400 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr6:29693800-29716000 Weak transcription Small Intestine intestine
31 chr6:29694000-29694800 Weak transcription Placenta Placenta
32 chr6:29694000-29696000 Strong transcription Left Ventricle heart
33 chr6:29694000-29696200 Strong transcription Adipose Nuclei Adipose
34 chr6:29694000-29696200 Strong transcription Liver Liver
35 chr6:29694000-29696200 Strong transcription Duodenum Smooth Muscle Duodenum
36 chr6:29694000-29696400 Genic enhancers Primary T helper naive cells fromperipheralblood blood
37 chr6:29694000-29696400 Strong transcription Lung lung
38 chr6:29694000-29696400 Strong transcription Sigmoid Colon Sigmoid Colon
39 chr6:29694000-29696400 Strong transcription Stomach Smooth Muscle stomach
40 chr6:29694000-29696600 Genic enhancers Primary B cells from peripheral blood blood
41 chr6:29694000-29696600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr6:29694000-29696600 Strong transcription Brain Anterior Caudate brain
43 chr6:29694000-29696600 Strong transcription Rectal Mucosa Donor 29 rectum
44 chr6:29694000-29696800 Strong transcription Colonic Mucosa Colon
45 chr6:29694000-29707000 Weak transcription Rectal Smooth Muscle rectum
46 chr6:29694000-29711200 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr6:29694000-29711400 Weak transcription Gastric stomach
48 chr6:29694000-29712200 Weak transcription Aorta Aorta
49 chr6:29694000-29715600 Weak transcription Colon Smooth Muscle Colon
50 chr6:29694200-29694800 Weak transcription Thymus Thymus

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