Variant report

Variant	rs3117313
Chromosome Location	chr6:29657808-29657809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs16895218	0.92[ASN][1000 genomes]
rs17178224	0.95[AFR][1000 genomes]
rs17178441	0.84[AFR][1000 genomes]
rs17184633	0.95[AFR][1000 genomes]
rs17184661	0.90[ASN][1000 genomes]
rs17875375	0.85[AFR][1000 genomes]
rs17875384	0.85[AFR][1000 genomes]
rs17875387	0.85[AFR][1000 genomes]
rs2474100	0.98[AFR][1000 genomes]
rs2535231	0.97[AFR][1000 genomes]
rs2535234	0.98[AFR][1000 genomes]
rs2535241	0.95[AFR][1000 genomes]
rs2535251	0.95[AFR][1000 genomes]
rs2535252	0.95[AFR][1000 genomes]
rs2535255	0.95[AFR][1000 genomes]
rs2535256	0.95[AFR][1000 genomes]
rs2535257	0.95[AFR][1000 genomes]
rs2535259	0.95[AFR][1000 genomes]
rs2747418	0.95[AFR][1000 genomes]
rs2747419	0.95[AFR][1000 genomes]
rs2747437	0.98[AFR][1000 genomes]
rs2747439	0.98[AFR][1000 genomes]
rs2747441	0.98[AFR][1000 genomes]
rs2747444	0.98[AFR][1000 genomes]
rs2747446	0.98[AFR][1000 genomes]
rs2747447	0.95[AFR][1000 genomes]
rs2747450	0.98[AFR][1000 genomes]
rs2747452	0.98[AFR][1000 genomes]
rs2747458	0.97[AFR][1000 genomes]
rs2747459	0.98[AFR][1000 genomes]
rs2747461	0.98[AFR][1000 genomes]
rs2747462	0.98[AFR][1000 genomes]
rs2747464	0.94[AFR][1000 genomes]
rs2747465	0.98[AFR][1000 genomes]
rs2747466	0.98[AFR][1000 genomes]
rs2857768	0.95[AFR][1000 genomes]
rs2857780	0.95[AFR][1000 genomes]
rs2857783	0.95[AFR][1000 genomes]
rs2857784	0.95[AFR][1000 genomes]
rs2907893	0.87[AFR][1000 genomes]
rs2907894	0.95[AFR][1000 genomes]
rs2907896	0.85[AFR][1000 genomes]
rs29233	0.92[ASN][1000 genomes]
rs29254	0.92[ASN][1000 genomes]
rs2982835	0.87[AFR][1000 genomes]
rs2982838	0.98[AFR][1000 genomes]
rs2982840	0.95[AFR][1000 genomes]
rs3094737	0.92[AFR][1000 genomes]
rs3117288	0.97[AFR][1000 genomes]
rs3117300	0.98[AFR][1000 genomes]
rs3117302	0.98[AFR][1000 genomes]
rs3117304	0.98[AFR][1000 genomes]
rs3117305	0.98[AFR][1000 genomes]
rs3117306	0.98[AFR][1000 genomes]
rs3117307	0.98[AFR][1000 genomes]
rs3117308	0.98[AFR][1000 genomes]
rs3117309	0.93[AFR][1000 genomes]
rs3117310	0.88[AFR][1000 genomes]
rs3117314	0.98[AFR][1000 genomes]
rs3117316	0.89[AFR][1000 genomes]
rs3129040	0.98[AFR][1000 genomes]
rs3129050	0.98[AFR][1000 genomes]
rs3129051	0.98[AFR][1000 genomes]
rs3129186	0.95[AFR][1000 genomes]
rs385743	0.98[AFR][1000 genomes]
rs387603	0.98[AFR][1000 genomes]
rs3906306	0.97[ASN][1000 genomes]
rs398931	0.98[AFR][1000 genomes]
rs406424	0.98[AFR][1000 genomes]
rs4085262	0.97[ASN][1000 genomes]
rs4085264	0.96[ASN][1000 genomes]
rs4143366	0.85[ASN][1000 genomes]
rs416560	0.98[AFR][1000 genomes]
rs422369	0.87[AFR][1000 genomes]
rs423281	0.98[AFR][1000 genomes]
rs423369	0.95[AFR][1000 genomes]
rs55661776	0.85[ASN][1000 genomes]
rs55672647	0.85[ASN][1000 genomes]
rs55693745	0.97[ASN][1000 genomes]
rs55792521	0.82[ASN][1000 genomes]
rs55933609	0.99[ASN][1000 genomes]
rs56044823	0.85[ASN][1000 genomes]
rs56101454	0.99[ASN][1000 genomes]
rs56155978	0.96[ASN][1000 genomes]
rs56172386	0.99[ASN][1000 genomes]
rs56211519	0.81[AFR][1000 genomes]
rs56269224	0.96[ASN][1000 genomes]
rs58121457	0.81[AFR][1000 genomes]
rs59144130	0.84[AFR][1000 genomes]
rs61524015	0.92[AFR][1000 genomes]
rs62391766	0.99[ASN][1000 genomes]
rs62391767	0.96[ASN][1000 genomes]
rs62391768	0.96[ASN][1000 genomes]
rs62391770	0.96[ASN][1000 genomes]
rs62391785	0.93[ASN][1000 genomes]
rs62391786	0.92[ASN][1000 genomes]
rs62391801	0.85[ASN][1000 genomes]
rs62391819	0.85[ASN][1000 genomes]
rs62391822	0.85[ASN][1000 genomes]
rs62391833	0.85[ASN][1000 genomes]
rs62392946	0.92[ASN][1000 genomes]
rs62392949	0.92[ASN][1000 genomes]
rs62392950	0.93[ASN][1000 genomes]
rs62392951	0.90[ASN][1000 genomes]
rs62392953	0.97[ASN][1000 genomes]
rs62392954	0.97[ASN][1000 genomes]
rs62392955	0.97[ASN][1000 genomes]
rs62392956	0.97[ASN][1000 genomes]
rs62392957	0.97[ASN][1000 genomes]
rs62392958	0.96[ASN][1000 genomes]
rs9468579	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv883530	chr6:29645038-29677641	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv970675	chr6:29657036-29692268	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29648800-29662600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links