Variant report

Variant	rs2535241
Chromosome Location	chr6:29640785-29640786
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29634001..29636635-chr6:29639490..29642126,2	K562	blood:

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs11751282	0.81[EUR][1000 genomes]
rs11751381	0.81[EUR][1000 genomes]
rs11751397	0.81[EUR][1000 genomes]
rs11751915	0.81[EUR][1000 genomes]
rs11752530	0.81[EUR][1000 genomes]
rs11753758	0.81[EUR][1000 genomes]
rs11753812	0.81[EUR][1000 genomes]
rs11753867	0.81[EUR][1000 genomes]
rs11753872	0.81[EUR][1000 genomes]
rs11754577	0.81[EUR][1000 genomes]
rs11755659	0.81[EUR][1000 genomes]
rs11757929	0.81[EUR][1000 genomes]
rs11757937	0.81[EUR][1000 genomes]
rs11757990	0.81[EUR][1000 genomes]
rs11758056	0.81[EUR][1000 genomes]
rs11758087	0.81[EUR][1000 genomes]
rs11759271	0.81[EUR][1000 genomes]
rs12110334	0.81[EUR][1000 genomes]
rs12110682	0.81[EUR][1000 genomes]
rs12111521	0.81[EUR][1000 genomes]
rs1632956	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs17178224	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17178441	0.82[AFR][1000 genomes]
rs17178602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17178658	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17178665	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17178735	0.81[EUR][1000 genomes]
rs17184633	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17875375	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17875384	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17875387	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2474100	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2535231	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2535234	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2535251	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2535252	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2535255	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2535256	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2535257	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2535259	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747418	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747419	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747420	0.83[AFR][1000 genomes]
rs2747437	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747439	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747441	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747444	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747446	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747447	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2747450	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747452	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747458	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2747459	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747461	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747462	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747464	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747465	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747466	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2857768	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2857780	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2857783	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2857784	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28578751	0.81[EUR][1000 genomes]
rs28802633	0.81[EUR][1000 genomes]
rs28840978	0.81[EUR][1000 genomes]
rs2907893	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2907894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2907896	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2982835	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2982838	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2982840	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3094737	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3117288	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3117300	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3117302	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3117304	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3117305	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3117306	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3117307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3117308	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3117309	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3117310	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3117313	0.95[AFR][1000 genomes]
rs3117314	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3117316	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3129040	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3129050	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3129051	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3129186	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34416032	0.81[EUR][1000 genomes]
rs34735344	0.81[EUR][1000 genomes]
rs34792092	0.81[EUR][1000 genomes]
rs35197595	0.81[EUR][1000 genomes]
rs35728173	0.81[EUR][1000 genomes]
rs35794939	0.81[EUR][1000 genomes]
rs36073133	0.81[EUR][1000 genomes]
rs36106954	0.81[EUR][1000 genomes]
rs3734820	0.81[EUR][1000 genomes]
rs385743	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs387603	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3892549	0.81[EUR][1000 genomes]
rs398931	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs406424	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs416560	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs422369	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs423281	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs423369	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56091723	0.81[EUR][1000 genomes]
rs56170912	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182102	0.81[EUR][1000 genomes]
rs56211519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56241766	0.81[EUR][1000 genomes]
rs56315562	0.81[EUR][1000 genomes]
rs58121457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58147175	0.81[EUR][1000 genomes]
rs59144130	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59408697	0.81[EUR][1000 genomes]
rs61524015	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932033	0.81[EUR][1000 genomes]
rs6932384	0.81[EUR][1000 genomes]
rs72507835	0.81[EUR][1000 genomes]
rs72507839	0.81[EUR][1000 genomes]
rs73745404	0.81[EUR][1000 genomes]
rs73745405	0.81[EUR][1000 genomes]
rs73745406	0.81[EUR][1000 genomes]
rs73745429	0.81[EUR][1000 genomes]
rs73745430	0.81[EUR][1000 genomes]
rs73745431	0.81[EUR][1000 genomes]
rs73745455	0.81[EUR][1000 genomes]
rs73745456	0.81[EUR][1000 genomes]
rs73745473	0.81[EUR][1000 genomes]
rs73745480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745481	0.81[EUR][1000 genomes]
rs73745483	0.81[EUR][1000 genomes]
rs73745488	0.81[EUR][1000 genomes]
rs73745489	0.81[EUR][1000 genomes]
rs73745491	0.81[EUR][1000 genomes]
rs73745492	0.81[EUR][1000 genomes]
rs73745494	0.81[EUR][1000 genomes]
rs73747518	0.81[EUR][1000 genomes]
rs73747522	0.81[EUR][1000 genomes]
rs73747524	0.81[EUR][1000 genomes]
rs73747525	0.81[EUR][1000 genomes]
rs73747534	0.81[EUR][1000 genomes]
rs7758742	0.81[EUR][1000 genomes]
rs7775919	0.81[EUR][1000 genomes]
rs9468579	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9500984	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29630800-29643200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:29634600-29641000	Weak transcription	Brain Anterior Caudate	brain
4	chr6:29634600-29642000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:29636400-29643800	Weak transcription	Fetal Heart	heart
6	chr6:29636600-29642000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:29636600-29644800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:29637000-29644400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:29638800-29644400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:29639600-29641400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:29639600-29641400	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:29639600-29641400	Weak transcription	Brain Substantia Nigra	brain
13	chr6:29639600-29647400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:29639800-29643400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:29640200-29640800	Strong transcription	NHEK	skin
16	chr6:29640600-29641400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:29640600-29643800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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