Variant report

Variant	rs17882230
Chromosome Location	chr5:79367696-79367697
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr5:79367513-79367793	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79365975..79368372-chr5:79371520..79373267,2	MCF-7	breast:

Variant related genes	Relation type
THBS4	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17878812	1.00[AMR][1000 genomes]
rs17879460	1.00[AMR][1000 genomes]
rs17879695	1.00[AMR][1000 genomes]
rs17882513	1.00[AMR][1000 genomes]
rs17886956	1.00[AMR][1000 genomes]
rs59692839	1.00[AMR][1000 genomes]
rs73115672	1.00[AMR][1000 genomes]
rs73123648	1.00[AMR][1000 genomes]
rs73770664	1.00[AMR][1000 genomes]
rs73770679	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79351600-79379200	Weak transcription	Pancreas	Pancrea
2	chr5:79352400-79378200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:79354600-79378400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:79356600-79373800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:79357000-79373200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:79357200-79372800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:79357800-79367800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:79358400-79373600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:79359600-79378200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:79360000-79378200	Weak transcription	Brain Angular Gyrus	brain
11	chr5:79361000-79374400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr5:79361400-79378400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:79361600-79378400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:79361800-79378400	Strong transcription	Primary T cells from cord blood	blood
15	chr5:79362600-79377800	Weak transcription	Brain Germinal Matrix	brain
16	chr5:79362600-79378600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr5:79362800-79372600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr5:79363000-79378800	Weak transcription	Thymus	Thymus
19	chr5:79364200-79372800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:79364200-79373000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:79364400-79369200	Enhancers	NHDF-Ad	bronchial
22	chr5:79364400-79378200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:79365400-79369000	Enhancers	Osteobl	bone
24	chr5:79365800-79369000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:79365800-79378200	Weak transcription	Fetal Stomach	stomach
26	chr5:79366000-79379000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr5:79366000-79388000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr5:79366200-79368200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:79366200-79368200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:79366200-79373000	Weak transcription	Fetal Muscle Leg	muscle
31	chr5:79366200-79373000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr5:79366200-79373800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr5:79366200-79378200	Weak transcription	Adipose Nuclei	Adipose
34	chr5:79366200-79378400	Weak transcription	Fetal Intestine Small	intestine
35	chr5:79366200-79379000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr5:79366200-79385000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr5:79366200-79392400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:79366400-79368200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr5:79366400-79375600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr5:79366400-79378400	Weak transcription	Liver	Liver
41	chr5:79366400-79378600	Weak transcription	Placenta	Placenta
42	chr5:79366400-79379200	Weak transcription	Spleen	Spleen
43	chr5:79366600-79367800	Strong transcription	Brain Substantia Nigra	brain
44	chr5:79366600-79368000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr5:79366600-79368400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:79366600-79368800	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr5:79366600-79371200	Weak transcription	Ovary	ovary
48	chr5:79366600-79372000	Weak transcription	Right Atrium	heart
49	chr5:79366600-79372600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr5:79366600-79378200	Weak transcription	Fetal Thymus	thymus

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