Variant report

Variant	rs73770664
Chromosome Location	chr5:79232869-79232870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17878812	1.00[AMR][1000 genomes]
rs17879460	1.00[AMR][1000 genomes]
rs17879695	1.00[AMR][1000 genomes]
rs17882230	1.00[AMR][1000 genomes]
rs17882513	1.00[AMR][1000 genomes]
rs17886956	1.00[AMR][1000 genomes]
rs59692839	1.00[AMR][1000 genomes]
rs73115672	1.00[AMR][1000 genomes]
rs73123648	1.00[AMR][1000 genomes]
rs73770679	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1822393	chr5:79195538-79260489	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79230200-79235400	Enhancers	HMEC	breast
2	chr5:79230400-79234400	Enhancers	NHEK	skin
3	chr5:79230400-79235000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:79231000-79233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:79231200-79233000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:79231200-79233000	Enhancers	NHDF-Ad	bronchial
7	chr5:79232000-79233000	Enhancers	Osteobl	bone
8	chr5:79232600-79233200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:79232800-79233200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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