Variant report

Variant	rs73770679
Chromosome Location	chr5:79252356-79252357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79243051..79245888-chr5:79249775..79252734,2	K562	blood:
2	chr5:79252333..79253868-chr5:79285797..79288103,2	MCF-7	breast:
3	chr5:79249486..79252419-chr5:79253972..79256405,2	MCF-7	breast:
4	chr5:79250469..79253672-chr5:79285038..79288543,6	MCF-7	breast:
5	chr5:79251016..79252738-chr5:79254951..79256533,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177034	Chromatin interaction
ENSG00000113296	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17878812	1.00[AMR][1000 genomes]
rs17879460	1.00[AMR][1000 genomes]
rs17879695	1.00[AMR][1000 genomes]
rs17882230	1.00[AMR][1000 genomes]
rs17882513	1.00[AMR][1000 genomes]
rs17886956	1.00[AMR][1000 genomes]
rs59692839	1.00[AMR][1000 genomes]
rs73115672	1.00[AMR][1000 genomes]
rs73123648	1.00[AMR][1000 genomes]
rs73770664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1822393	chr5:79195538-79260489	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79250400-79252600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:79250400-79252600	Enhancers	NHDF-Ad	bronchial
3	chr5:79250600-79252600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:79250600-79252600	Enhancers	Fetal Muscle Leg	muscle
5	chr5:79250800-79252400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:79250800-79252600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:79250800-79252600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:79250800-79252600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:79250800-79252600	Enhancers	HMEC	breast
10	chr5:79250800-79252800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:79250800-79253400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:79250800-79253600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:79251000-79252400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:79251000-79252400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:79251000-79254000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:79251200-79252600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:79251200-79252600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr5:79251200-79252800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:79251200-79252800	Enhancers	HSMM	muscle
20	chr5:79251600-79252400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:79251600-79252400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:79251600-79252600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:79251600-79252800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr5:79251600-79252800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr5:79251600-79253200	Enhancers	HSMMtube	muscle
26	chr5:79251600-79253400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:79251800-79252600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:79251800-79252800	Enhancers	NH-A	brain
29	chr5:79251800-79257600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:79252000-79252400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr5:79252000-79252600	Enhancers	NHLF	lung
32	chr5:79252000-79252800	Flanking Active TSS	NHEK	skin
33	chr5:79252000-79252800	Enhancers	Osteobl	bone
34	chr5:79252200-79252400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:79252200-79252400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:79252200-79252600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:79252200-79252600	Enhancers	Esophagus	oesophagus
38	chr5:79252200-79252600	Enhancers	Fetal Muscle Trunk	muscle

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