Variant report

Variant	rs1790160
Chromosome Location	chr11:75180228-75180229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75112364..75115138-chr11:75178491..75181185,2	K562	blood:
2	chr11:75173375..75176105-chr11:75178046..75180921,2	MCF-7	breast:
3	chr11:75179585..75185021-chr11:75186117..75188825,5	K562	blood:
4	chr11:75109241..75111992-chr11:75179238..75181170,2	K562	blood:

Variant related genes	Relation type
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10751243	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1557474	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1623440	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1631865	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790145	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790149	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790153	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790154	0.86[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1790155	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1790156	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790158	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793396	0.81[JPT][hapmap]
rs1793398	0.86[JPT][hapmap]
rs1793411	0.81[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1793412	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1793415	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894213	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs471857	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs473462	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs474056	0.86[CEU][hapmap];0.93[CHB][hapmap];0.91[EUR][1000 genomes]
rs482458	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs482503	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs486326	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs488305	0.85[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs492309	0.92[EUR][1000 genomes]
rs504685	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs518611	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs523617	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs532454	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs535520	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs535523	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs546632	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs547844	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs550957	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs578840	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs609793	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs611449	0.86[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs623338	0.85[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs625938	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs653673	0.86[CEU][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs668727	0.86[CEU][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv993847	chr11:75176894-75187181	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75144200-75186600	Weak transcription	Gastric	stomach
2	chr11:75145200-75186200	Weak transcription	Primary T cells from cord blood	blood
3	chr11:75145200-75186400	Strong transcription	Fetal Intestine Small	intestine
4	chr11:75147800-75186000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:75148200-75186000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:75162800-75185000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:75163800-75186200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:75165200-75187000	Strong transcription	HepG2	liver
9	chr11:75166600-75186800	Weak transcription	Pancreas	Pancrea
10	chr11:75167400-75180400	Weak transcription	Aorta	Aorta
11	chr11:75168400-75183400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr11:75172000-75184400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:75172200-75184400	Enhancers	Spleen	Spleen
14	chr11:75172400-75183200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:75172600-75180400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:75173000-75181200	Enhancers	HUVEC	blood vessel
17	chr11:75173400-75185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:75173600-75185800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:75174600-75186600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:75175600-75184000	Enhancers	Fetal Muscle Leg	muscle
21	chr11:75176200-75181000	Genic enhancers	Placenta	Placenta
22	chr11:75176200-75184600	Enhancers	HSMMtube	muscle
23	chr11:75176600-75180600	Enhancers	Lung	lung
24	chr11:75176600-75180600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:75176800-75180400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:75176800-75180800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:75177200-75181000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr11:75177400-75186800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:75177800-75180600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:75177800-75182600	Weak transcription	HMEC	breast
31	chr11:75178400-75180600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr11:75178400-75180800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:75178600-75180600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:75178600-75182000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:75178600-75185800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:75178800-75180400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:75179000-75181400	Enhancers	Fetal Brain Male	brain
38	chr11:75179200-75180400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr11:75179200-75180400	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr11:75179200-75180400	Enhancers	Fetal Brain Female	brain
41	chr11:75179200-75180600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:75179200-75180600	Enhancers	Left Ventricle	heart
43	chr11:75179200-75180800	Enhancers	Ovary	ovary
44	chr11:75179400-75180400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:75179400-75180400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:75179400-75180400	Enhancers	Brain Germinal Matrix	brain
47	chr11:75179400-75180400	Enhancers	Colon Smooth Muscle	Colon
48	chr11:75179400-75180400	Enhancers	Fetal Lung	lung
49	chr11:75179400-75180400	Enhancers	HSMM	muscle
50	chr11:75179400-75180600	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links