Variant report

Variant	rs1790153
Chromosome Location	chr11:75187643-75187644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75185809..75187737-chr11:75194465..75195996,2	K562	blood:
2	chr11:75186423..75188493-chr11:75202325..75205145,2	K562	blood:
3	chr11:75186137..75188818-chr11:75245561..75247908,2	K562	blood:
4	chr11:75187397..75189556-chr11:75217050..75219601,2	K562	blood:
5	chr11:75179585..75185021-chr11:75186117..75188825,5	K562	blood:
6	chr11:75187049..75188638-chr11:75235705..75238592,2	K562	blood:
7	chr11:75186653..75188818-chr11:75244939..75247061,2	K562	blood:
8	chr11:75186128..75188167-chr11:75208590..75210780,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254460	Chromatin interaction
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1004856	0.87[AFR][1000 genomes]
rs10751243	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1557474	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623440	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1631865	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790145	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790149	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790154	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1790155	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1790156	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790158	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790160	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1793411	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1793412	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1793414	0.86[AFR][1000 genomes]
rs1793415	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894213	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs471857	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs473462	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs474056	0.87[EUR][1000 genomes]
rs482458	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs482503	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs486326	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs488305	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs492309	0.86[EUR][1000 genomes]
rs504685	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs518611	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs523617	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs532454	0.86[EUR][1000 genomes]
rs535520	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs535523	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs546632	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs547844	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs550957	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs609793	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs611449	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs623338	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs625938	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs653673	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs668727	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75181800-75188800	Enhancers	Fetal Muscle Trunk	muscle
2	chr11:75182400-75192400	Strong transcription	Fetal Intestine Large	intestine
3	chr11:75184200-75187800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:75184400-75188800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:75184600-75188400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:75184600-75188400	Enhancers	Fetal Thymus	thymus
7	chr11:75184800-75188800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:75185000-75187800	Enhancers	HUVEC	blood vessel
9	chr11:75185000-75189000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:75185200-75187800	Enhancers	Stomach Mucosa	stomach
11	chr11:75185200-75188200	Enhancers	Spleen	Spleen
12	chr11:75185400-75188800	Enhancers	Lung	lung
13	chr11:75185600-75188400	Enhancers	Right Ventricle	heart
14	chr11:75185600-75188400	Enhancers	A549	lung
15	chr11:75185600-75188600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:75185600-75189000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr11:75185800-75188800	Enhancers	Liver	Liver
18	chr11:75186000-75187800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr11:75186000-75188000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:75186000-75188200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr11:75186200-75187800	Enhancers	Brain Cingulate Gyrus	brain
22	chr11:75186200-75188000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:75186200-75188200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr11:75186200-75188600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr11:75186400-75187800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:75186400-75187800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:75186400-75188400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:75186400-75188400	Enhancers	Stomach Smooth Muscle	stomach
29	chr11:75186400-75188400	Enhancers	HSMM	muscle
30	chr11:75186600-75187800	Enhancers	Fetal Brain Female	brain
31	chr11:75186600-75187800	Enhancers	Gastric	stomach
32	chr11:75186600-75188200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr11:75186600-75188400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr11:75186600-75188600	Genic enhancers	Fetal Muscle Leg	muscle
35	chr11:75186600-75188800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:75186800-75187800	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr11:75186800-75187800	Enhancers	Colon Smooth Muscle	Colon
38	chr11:75186800-75188000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:75186800-75188400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:75186800-75188400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:75186800-75188400	Enhancers	Left Ventricle	heart
42	chr11:75186800-75188400	Enhancers	Psoas Muscle	Psoas
43	chr11:75186800-75188800	Genic enhancers	Placenta	Placenta
44	chr11:75186800-75188800	Enhancers	K562	blood
45	chr11:75186800-75189000	Enhancers	Pancreas	Pancrea
46	chr11:75187000-75187800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr11:75187000-75187800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr11:75187000-75188200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:75187000-75190000	Weak transcription	Fetal Stomach	stomach
50	chr11:75187000-75193600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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