Variant report

Variant	rs1793414
Chromosome Location	chr11:75182687-75182688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75179585..75185021-chr11:75186117..75188825,5	K562	blood:
2	chr11:75182448..75185750-chr11:75189999..75193273,3	K562	blood:

Variant related genes	Relation type
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1004856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751243	0.93[AFR][1000 genomes]
rs11236441	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1540210	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs1540211	1.00[JPT][hapmap]
rs1557471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557474	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs1631470	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790145	0.87[AFR][1000 genomes]
rs1790147	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1790149	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs1790152	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1790153	0.86[AFR][1000 genomes]
rs1790154	0.86[YRI][hapmap];0.91[AFR][1000 genomes]
rs1790156	0.97[AFR][1000 genomes]
rs1793410	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs1793411	0.83[AFR][1000 genomes]
rs1793415	0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs2853066	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs499613	0.90[CEU][hapmap];0.97[EUR][1000 genomes]
rs504793	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs511190	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs514477	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs540269	1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs544719	0.92[EUR][1000 genomes]
rs546632	0.93[AFR][1000 genomes]
rs548439	0.93[EUR][1000 genomes]
rs549034	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs550881	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs550957	0.89[AFR][1000 genomes]
rs566818	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs571353	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs581007	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs589724	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs611449	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs623338	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs625938	0.86[AFR][1000 genomes]
rs628972	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs653673	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs667410	0.95[CEU][hapmap];0.99[EUR][1000 genomes]
rs668727	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs669601	0.96[EUR][1000 genomes]
rs682292	0.95[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	esv993847	chr11:75176894-75187181	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75144200-75186600	Weak transcription	Gastric	stomach
2	chr11:75145200-75186200	Weak transcription	Primary T cells from cord blood	blood
3	chr11:75145200-75186400	Strong transcription	Fetal Intestine Small	intestine
4	chr11:75147800-75186000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:75148200-75186000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:75162800-75185000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:75163800-75186200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:75165200-75187000	Strong transcription	HepG2	liver
9	chr11:75166600-75186800	Weak transcription	Pancreas	Pancrea
10	chr11:75168400-75183400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:75172000-75184400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:75172200-75184400	Enhancers	Spleen	Spleen
13	chr11:75172400-75183200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:75173400-75185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:75173600-75185800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:75174600-75186600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:75175600-75184000	Enhancers	Fetal Muscle Leg	muscle
18	chr11:75176200-75184600	Enhancers	HSMMtube	muscle
19	chr11:75177400-75186800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:75178600-75185800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:75180000-75183200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:75180200-75185000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:75180200-75185200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:75180200-75185200	Weak transcription	Liver	Liver
25	chr11:75180200-75186000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:75180200-75186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:75180400-75184800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:75180400-75185200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:75180400-75185600	Weak transcription	Esophagus	oesophagus
30	chr11:75180400-75185600	Weak transcription	Fetal Lung	lung
31	chr11:75180400-75186000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:75180400-75186400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:75180400-75186400	Weak transcription	Brain Germinal Matrix	brain
34	chr11:75180400-75186400	Weak transcription	Colon Smooth Muscle	Colon
35	chr11:75180400-75186400	Weak transcription	Osteobl	bone
36	chr11:75180600-75183200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:75180600-75183400	Weak transcription	Lung	lung
38	chr11:75180600-75184400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:75180600-75184600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:75180600-75185600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:75180600-75185800	Weak transcription	K562	blood
42	chr11:75180600-75186400	Weak transcription	Right Atrium	heart
43	chr11:75180800-75183000	Weak transcription	NHLF	lung
44	chr11:75180800-75184800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:75180800-75185600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:75181000-75183200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:75181200-75185000	Weak transcription	HUVEC	blood vessel
48	chr11:75181200-75185600	Weak transcription	Right Ventricle	heart
49	chr11:75181600-75186400	Genic enhancers	Placenta	Placenta
50	chr11:75181800-75184000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links