Variant report

Variant	rs1790156
Chromosome Location	chr11:75187389-75187390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75185809..75187737-chr11:75194465..75195996,2	K562	blood:
2	chr11:75186423..75188493-chr11:75202325..75205145,2	K562	blood:
3	chr11:75185137..75187494-chr11:75526962..75529134,2	K562	blood:
4	chr11:75186137..75188818-chr11:75245561..75247908,2	K562	blood:
5	chr11:75179585..75185021-chr11:75186117..75188825,5	K562	blood:
6	chr11:75187049..75188638-chr11:75235705..75238592,2	K562	blood:
7	chr11:75186653..75188818-chr11:75244939..75247061,2	K562	blood:
8	chr11:75186128..75188167-chr11:75208590..75210780,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1004856	0.95[AFR][1000 genomes]
rs10751243	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236441	0.81[AFR][1000 genomes]
rs1557474	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623440	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1631470	0.82[AFR][1000 genomes]
rs1631865	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790145	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790149	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790153	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790154	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1790155	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1790158	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790160	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1793411	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1793412	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1793414	0.97[AFR][1000 genomes]
rs1793415	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894213	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs471857	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs473462	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs474056	0.87[EUR][1000 genomes]
rs482458	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs482503	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs486326	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs488305	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs492309	0.86[EUR][1000 genomes]
rs504685	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs518611	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs523617	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs532454	0.86[EUR][1000 genomes]
rs535520	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs535523	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs546632	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs547844	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs550957	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs609793	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs611449	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs623338	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs625938	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs628972	0.87[AFR][1000 genomes]
rs653673	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs668727	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75181800-75188800	Enhancers	Fetal Muscle Trunk	muscle
2	chr11:75182400-75192400	Strong transcription	Fetal Intestine Large	intestine
3	chr11:75184200-75187800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:75184400-75188800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:75184600-75187400	Weak transcription	HSMMtube	muscle
6	chr11:75184600-75188400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:75184600-75188400	Enhancers	Fetal Thymus	thymus
8	chr11:75184800-75187400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:75184800-75188800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:75185000-75187800	Enhancers	HUVEC	blood vessel
11	chr11:75185000-75189000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:75185200-75187400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:75185200-75187600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:75185200-75187600	Enhancers	NHLF	lung
15	chr11:75185200-75187800	Enhancers	Stomach Mucosa	stomach
16	chr11:75185200-75188200	Enhancers	Spleen	Spleen
17	chr11:75185400-75187400	Enhancers	Primary hematopoietic stem cells	blood
18	chr11:75185400-75188800	Enhancers	Lung	lung
19	chr11:75185600-75187400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:75185600-75187400	Enhancers	Fetal Lung	lung
21	chr11:75185600-75187400	Enhancers	GM12878-XiMat	blood
22	chr11:75185600-75188400	Enhancers	Right Ventricle	heart
23	chr11:75185600-75188400	Enhancers	A549	lung
24	chr11:75185600-75188600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:75185600-75189000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr11:75185800-75187400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:75185800-75187400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:75185800-75187400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr11:75185800-75188800	Enhancers	Liver	Liver
30	chr11:75186000-75187400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:75186000-75187400	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr11:75186000-75187400	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr11:75186000-75187400	Flanking Active TSS	Dnd41	blood
34	chr11:75186000-75187600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:75186000-75187600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr11:75186000-75187800	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr11:75186000-75188000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:75186000-75188200	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr11:75186200-75187400	Enhancers	Brain Hippocampus Middle	brain
40	chr11:75186200-75187600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:75186200-75187800	Enhancers	Brain Cingulate Gyrus	brain
42	chr11:75186200-75188000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:75186200-75188200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr11:75186200-75188600	Enhancers	Primary T cells fromperipheralblood	blood
45	chr11:75186400-75187400	Enhancers	Primary B cells from peripheral blood	blood
46	chr11:75186400-75187400	Enhancers	Right Atrium	heart
47	chr11:75186400-75187400	Enhancers	Thymus	Thymus
48	chr11:75186400-75187600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:75186400-75187600	Enhancers	Brain Germinal Matrix	brain
50	chr11:75186400-75187600	Enhancers	Fetal Brain Male	brain

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