Variant report

Variant rs1800469
Chromosome Location chr19:41860296-41860297
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41856000-41860400 Active TSS Osteobl bone
2 chr19:41856600-41860400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr19:41856600-41860400 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr19:41856800-41860400 Active TSS Aorta Aorta
5 chr19:41856800-41860400 Active TSS Ovary ovary
6 chr19:41857000-41860400 Active TSS Pancreatic Islets Pancreatic Islet
7 chr19:41857200-41860600 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr19:41857600-41860400 Active TSS Hela-S3 cervix
9 chr19:41858200-41860600 Enhancers Fetal Heart heart
10 chr19:41858400-41860400 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
11 chr19:41858400-41860400 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
12 chr19:41858600-41860400 Active TSS Fetal Kidney kidney
13 chr19:41858600-41860400 Active TSS Right Ventricle heart
14 chr19:41858800-41861000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
15 chr19:41859200-41860400 Active TSS H9 Cell Line embryonic stem cell
16 chr19:41859200-41860400 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr19:41859200-41860800 Active TSS HUES6 Cell Line embryonic stem cell
18 chr19:41859400-41860400 Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr19:41859400-41860600 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
20 chr19:41859600-41860400 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr19:41859600-41860400 Active TSS HUES64 Cell Line embryonic stem cell
22 chr19:41859600-41860400 Bivalent/Poised TSS Psoas Muscle Psoas
23 chr19:41859600-41861000 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr19:41859800-41860600 Enhancers Primary B cells from peripheral blood blood
25 chr19:41859800-41860800 ZNF genes & repeats Thymus Thymus
26 chr19:41859800-41861000 Enhancers Liver Liver
27 chr19:41859800-41862200 Enhancers Primary B cells from cord blood blood
28 chr19:41859800-41868200 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr19:41860000-41860400 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
30 chr19:41860000-41860400 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
31 chr19:41860000-41860400 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
32 chr19:41860000-41860400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
33 chr19:41860000-41860400 Flanking Active TSS Primary T cells fromperipheralblood blood
34 chr19:41860000-41860400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
35 chr19:41860000-41860400 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
36 chr19:41860000-41860400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
37 chr19:41860000-41860400 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
38 chr19:41860000-41860400 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
39 chr19:41860000-41860400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr19:41860000-41860400 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
41 chr19:41860000-41860400 Flanking Active TSS Brain Anterior Caudate brain
42 chr19:41860000-41860400 Flanking Active TSS Brain Hippocampus Middle brain
43 chr19:41860000-41860400 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
44 chr19:41860000-41860400 Flanking Active TSS Brain Substantia Nigra brain
45 chr19:41860000-41860400 Flanking Active TSS Duodenum Smooth Muscle Duodenum
46 chr19:41860000-41860400 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
47 chr19:41860000-41860400 Flanking Bivalent TSS/Enh Fetal Brain Male brain
48 chr19:41860000-41860400 Flanking Bivalent TSS/Enh Fetal Intestine Large intestine
49 chr19:41860000-41860400 Flanking Bivalent TSS/Enh Fetal Intestine Small intestine
50 chr19:41860000-41860400 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle

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