Variant report

Variant	rs1807983
Chromosome Location	chr6:132457849-132457850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132454814-132459405	GM12878	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ENPP1-4	chr6:132456580-132458073	XLOC_005465

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11154664	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1321265	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1321266	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1321267	0.82[ASN][1000 genomes]
rs1569448	0.89[ASN][1000 genomes]
rs1569450	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2064086	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4305744	0.89[ASN][1000 genomes]
rs4895928	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895929	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4897559	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6900897	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6909982	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483383	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9483385	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483386	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483387	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9483388	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493180	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493185	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9493186	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132454400-132461000	Weak transcription	Aorta	Aorta
2	chr6:132455400-132458200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:132455600-132458600	Weak transcription	HSMM	muscle
4	chr6:132455600-132461200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:132455600-132463800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:132455800-132459400	Weak transcription	NHDF-Ad	bronchial
7	chr6:132456400-132458400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:132456600-132461400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:132457200-132459400	Weak transcription	Osteobl	bone
10	chr6:132457200-132461800	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:132457400-132458200	Weak transcription	HSMMtube	muscle
12	chr6:132457800-132458200	Weak transcription	Primary B cells from cord blood	blood
13	chr6:132457800-132458200	Enhancers	HUVEC	blood vessel

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