Variant report

Variant	rs4305744
Chromosome Location	chr6:132437492-132437493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132434977-132438109	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11154664	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1321265	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1321266	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1569448	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569450	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807983	0.89[ASN][1000 genomes]
rs2064086	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4895928	0.96[ASN][1000 genomes]
rs4895929	0.90[ASN][1000 genomes]
rs4897559	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6900897	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6909982	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9483383	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9483385	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9483386	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9483387	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9483388	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9493180	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9493185	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9493186	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132435200-132438200	Enhancers	NH-A	brain
2	chr6:132435200-132442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:132436000-132437600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:132436400-132437600	Active TSS	Ovary	ovary
5	chr6:132436600-132437600	Active TSS	Liver	Liver
6	chr6:132436600-132437600	Active TSS	NHDF-Ad	bronchial
7	chr6:132436600-132437600	Active TSS	NHLF	lung
8	chr6:132436800-132437600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:132436800-132437600	Active TSS	Right Atrium	heart
10	chr6:132436800-132437800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:132436800-132437800	Active TSS	Aorta	Aorta
12	chr6:132436800-132437800	Flanking Active TSS	Osteobl	bone
13	chr6:132437000-132437600	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr6:132437000-132437600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:132437000-132437600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:132437000-132437600	Active TSS	Adipose Nuclei	Adipose
17	chr6:132437000-132437600	Active TSS	Colonic Mucosa	Colon
18	chr6:132437000-132437600	Active TSS	Duodenum Mucosa	Duodenum
19	chr6:132437000-132437600	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:132437000-132437600	Active TSS	Fetal Lung	lung
21	chr6:132437000-132437600	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr6:132437000-132437600	Active TSS	Rectal Mucosa Donor 31	rectum
23	chr6:132437000-132437600	Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr6:132437000-132437600	Active TSS	Stomach Smooth Muscle	stomach
25	chr6:132437000-132437600	Flanking Active TSS	NHEK	skin
26	chr6:132437000-132437800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:132437000-132437800	Flanking Active TSS	HUVEC	blood vessel
28	chr6:132437200-132437600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:132437200-132437600	Active TSS	HMEC	breast
30	chr6:132437200-132437800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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