Variant report

Variant	rs6900897
Chromosome Location	chr6:132437081-132437082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:132436910-132437272	MCF10A-Er-Src	breast:	n/a	n/a
2	FOXA1	chr6:132436981-132437150	T-47D	breast:	n/a	n/a
3	STAT3	chr6:132436857-132437195	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr6:132436811-132437261	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr6:132436933-132437170	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr6:132436916-132437184	MCF10A-Er-Src	breast:	n/a	n/a
7	TAF1	chr6:132437002-132437198	SK-N-SH	brain:	n/a	n/a
8	GATA3	chr6:132436922-132437192	T-47D	breast:	n/a	n/a
9	POLR2A	chr6:132436955-132437086	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr6:132436893-132437185	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr6:132436856-132437200	MCF10A-Er-Src	breast:	n/a	n/a
12	STAT3	chr6:132436845-132437173	MCF10A-Er-Src	breast:	n/a	n/a
13	E2F4	chr6:132436677-132437121	MCF10A-Er-Src	breast:	n/a	n/a
14	FOS	chr6:132436848-132437190	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132434977-132438109	Hela-S3	cervix:

Variant related genes	Relation type
MIR548AJ1	TF binding region
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11154664	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1321265	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1321266	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1569448	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1569450	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1807983	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2064086	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4305744	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4895928	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4895929	0.90[ASN][1000 genomes]
rs4897559	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6909982	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9483383	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9483385	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9483386	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9483387	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9483388	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9493180	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9493185	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9493186	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132435200-132438200	Enhancers	NH-A	brain
2	chr6:132435200-132442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:132436000-132437600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:132436200-132437200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:132436400-132437600	Active TSS	Ovary	ovary
6	chr6:132436600-132437600	Active TSS	Liver	Liver
7	chr6:132436600-132437600	Active TSS	NHDF-Ad	bronchial
8	chr6:132436600-132437600	Active TSS	NHLF	lung
9	chr6:132436800-132437200	Flanking Active TSS	HMEC	breast
10	chr6:132436800-132437600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:132436800-132437600	Active TSS	Right Atrium	heart
12	chr6:132436800-132437800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:132436800-132437800	Active TSS	Aorta	Aorta
14	chr6:132436800-132437800	Flanking Active TSS	Osteobl	bone
15	chr6:132437000-132437200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:132437000-132437400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:132437000-132437400	Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:132437000-132437400	Active TSS	Hela-S3	cervix
19	chr6:132437000-132437600	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:132437000-132437600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:132437000-132437600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:132437000-132437600	Active TSS	Adipose Nuclei	Adipose
23	chr6:132437000-132437600	Active TSS	Colonic Mucosa	Colon
24	chr6:132437000-132437600	Active TSS	Duodenum Mucosa	Duodenum
25	chr6:132437000-132437600	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr6:132437000-132437600	Active TSS	Fetal Lung	lung
27	chr6:132437000-132437600	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr6:132437000-132437600	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr6:132437000-132437600	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr6:132437000-132437600	Active TSS	Stomach Smooth Muscle	stomach
31	chr6:132437000-132437600	Flanking Active TSS	NHEK	skin
32	chr6:132437000-132437800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:132437000-132437800	Flanking Active TSS	HUVEC	blood vessel

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