Variant report

Variant	rs1809671
Chromosome Location	chr13:64412546-64412547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PCDH20-10	chr13:64412293-64412877	NONHSAT034185

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12427493	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12428552	0.91[ASN][1000 genomes]
rs12428562	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12429435	0.87[EUR][1000 genomes]
rs12429666	0.97[ASN][1000 genomes]
rs1591483	0.91[ASN][1000 genomes]
rs1809672	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809673	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809674	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1826133	0.94[ASN][1000 genomes]
rs1932376	0.91[ASN][1000 genomes]
rs2050477	1.00[ASN][1000 genomes]
rs2635991	0.91[ASN][1000 genomes]
rs275913	0.91[ASN][1000 genomes]
rs275932	1.00[ASN][1000 genomes]
rs3866531	0.87[EUR][1000 genomes]
rs4883724	0.94[ASN][1000 genomes]
rs4883725	0.94[ASN][1000 genomes]
rs4884521	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs498958	1.00[ASN][1000 genomes]
rs506695	0.91[ASN][1000 genomes]
rs536914	1.00[ASN][1000 genomes]
rs556065	0.91[ASN][1000 genomes]
rs563389	0.91[ASN][1000 genomes]
rs56890343	0.91[ASN][1000 genomes]
rs589325	0.91[ASN][1000 genomes]
rs590719	0.91[ASN][1000 genomes]
rs7335738	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74087239	0.91[ASN][1000 genomes]
rs74087241	0.88[ASN][1000 genomes]
rs7998209	0.91[ASN][1000 genomes]
rs9564124	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9571073	1.00[ASN][1000 genomes]
rs9571074	1.00[ASN][1000 genomes]
rs9571078	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2756457	chr13:64244499-64497199	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv870276	chr13:64287557-64424570	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900323	chr13:64290980-64513203	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1051772	chr13:64301592-64419179	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1042787	chr13:64301592-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2754198	chr13:64303507-64424251	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1046923	chr13:64321869-64419179	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1048045	chr13:64321869-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1036453	chr13:64329019-64430033	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1044100	chr13:64344469-64419179	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1046914	chr13:64344469-64419543	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv900331	chr13:64346536-64450375	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv832633	chr13:64385305-64521487	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1046038	chr13:64405310-64500692	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv976127	chr13:64407800-64424929	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv900332	chr13:64411616-64856866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	esv3365362	chr13:64412101-64414799	Inactive region	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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