Variant report

Variant	rs4883724
Chromosome Location	chr13:64415176-64415177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12427493	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12428552	0.85[ASN][1000 genomes]
rs12428562	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12429666	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1591483	0.85[ASN][1000 genomes]
rs1809671	0.94[ASN][1000 genomes]
rs1809672	0.94[ASN][1000 genomes]
rs1809673	0.94[ASN][1000 genomes]
rs1809674	0.94[ASN][1000 genomes]
rs1826133	0.89[ASN][1000 genomes]
rs1932376	0.85[ASN][1000 genomes]
rs2050477	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2635991	0.91[ASN][1000 genomes]
rs275913	0.85[ASN][1000 genomes]
rs275932	0.94[ASN][1000 genomes]
rs4883725	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4884521	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs498958	0.94[ASN][1000 genomes]
rs506695	0.85[ASN][1000 genomes]
rs536914	0.94[ASN][1000 genomes]
rs556065	0.85[ASN][1000 genomes]
rs563389	0.85[ASN][1000 genomes]
rs56890343	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs589325	0.85[ASN][1000 genomes]
rs590719	0.85[ASN][1000 genomes]
rs7335738	0.94[ASN][1000 genomes]
rs74087239	0.85[ASN][1000 genomes]
rs74087241	0.82[ASN][1000 genomes]
rs7998209	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9564124	0.97[ASN][1000 genomes]
rs9571073	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9571074	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9571078	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2756457	chr13:64244499-64497199	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv870276	chr13:64287557-64424570	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900323	chr13:64290980-64513203	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1051772	chr13:64301592-64419179	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1042787	chr13:64301592-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2754198	chr13:64303507-64424251	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1046923	chr13:64321869-64419179	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1048045	chr13:64321869-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1036453	chr13:64329019-64430033	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1044100	chr13:64344469-64419179	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1046914	chr13:64344469-64419543	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv900331	chr13:64346536-64450375	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv832633	chr13:64385305-64521487	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1046038	chr13:64405310-64500692	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv976127	chr13:64407800-64424929	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv900332	chr13:64411616-64856866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	esv2829984	chr13:64412839-64517258	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv561964	chr13:64412839-64967458	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	esv3522219	chr13:64415054-64415372	ZNF genes & repeats Enhancers	CpG island	1 gene(s)	inside rSNPs	diseases
21	esv3522230	chr13:64415126-64415290	ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64415000-64415200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:64415000-64415600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:64415000-64415600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links