Variant report

Variant	rs9571073
Chromosome Location	chr13:64416853-64416854
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:64416816-64416866	AG04450	lung:	fetal
2	chr13:64416816-64416866	SK-N-MC	brain:	n/a
3	chr13:64416816-64416866	HMEC	breast:	n/a
4	chr13:64416816-64416866	CMK	blood:	n/a
5	chr13:64416816-64416866	BJ	skin:	n/a
6	chr13:64416816-64416866	RPTEC	kidney:	n/a
7	chr13:64416816-64416866	NHBE	bronchial:	n/a
8	chr13:64416816-64416866	PrEC	prostate:	n/a
9	chr13:64416816-64416866	SK-N-SH	brain:	n/a
10	chr13:64416816-64416866	HEK293	kidney:	embryo
11	chr13:64416816-64416866	T-47D	breast:	n/a
12	chr13:64416816-64416866	GM19239	blood:	n/a
13	chr13:64416816-64416866	HIPEpiC	eye:	n/a
14	chr13:64416816-64416866	HEEpiC	esophagus:	n/a
15	chr13:64416816-64416866	AoSMC	blood vessel:	n/a
16	chr13:64416816-64416866	HRE	kidney:	n/a
17	chr13:64416816-64416866	MCF10A-Er-Src	breast:	n/a
18	chr13:64416816-64416866	GM12878	blood:	n/a
19	chr13:64416816-64416866	LNCaP	prostate:	n/a
20	chr13:64416816-64416866	Jurkat	blood:	n/a
21	chr13:64416816-64416866	HRPEpiC	eye:	n/a
22	chr13:64416816-64416866	HL-60	blood:	n/a
23	chr13:64416816-64416866	AG09309	skin:	n/a
24	chr13:64416816-64416866	HRCEpiC	kidney:	n/a
25	chr13:64416816-64416866	K562	blood:	n/a
26	chr13:64416816-64416866	SK-N-SH_RA	brain:	n/a
27	chr13:64416816-64416866	HPAEpiC	pulmonary alveolar:	n/a
28	chr13:64416816-64416866	PFSK-1	brain:	n/a
29	chr13:64416816-64416866	Hela-S3	cervix:	n/a
30	chr13:64416816-64416866	GM06990	blood:	n/a
31	chr13:64416816-64416866	AG09319	gingival:	n/a
32	chr13:64416816-64416866	NT2-D1	testis:	n/a
33	chr13:64416816-64416866	HCM	heart:	n/a
34	chr13:64416816-64416866	IMR90	lung:	fetal
35	chr13:64416816-64416866	SKMC	muscle:	n/a
36	chr13:64416816-64416866	PANC-1	pancreas:	n/a
37	chr13:64416816-64416866	AG04449	skin:	fetal
38	chr13:64416816-64416866	H1-hESC	embryonic stem cell:	embryo
39	chr13:64416816-64416866	Hepatocyte	liver:	n/a
40	chr13:64416816-64416866	ovcar-3	ovarian:	n/a
41	chr13:64416816-64416866	HepG2	liver:	n/a
42	chr13:64416816-64416866	NB4	blood:	n/a
43	chr13:64416816-64416866	ECC-1	luminal epithelium:	n/a
44	chr13:64416816-64416866	HCF	heart:	n/a
45	chr13:64416816-64416866	GM12892	blood:	n/a
46	chr13:64416816-64416866	SAEC	small airway:	n/a
47	chr13:64416816-64416866	A549	lung:	n/a
48	chr13:64416816-64416866	HNPCEpiC	eye:	n/a
49	chr13:64416816-64416866	HCPEpiC	choroid plexus:	n/a
50	chr13:64416816-64416866	HCT-116	colon:	n/a

No data

Variant related genes	Relation type
ENSG00000272299	CpG island

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12427493	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12428552	0.91[ASN][1000 genomes]
rs12428562	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12429666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12431127	0.84[EUR][1000 genomes]
rs1591483	0.91[ASN][1000 genomes]
rs1809671	1.00[ASN][1000 genomes]
rs1809672	1.00[ASN][1000 genomes]
rs1809673	1.00[ASN][1000 genomes]
rs1809674	1.00[ASN][1000 genomes]
rs1826133	0.94[ASN][1000 genomes]
rs183919	0.91[EUR][1000 genomes]
rs1932376	0.91[ASN][1000 genomes]
rs2050477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2635991	0.91[ASN][1000 genomes]
rs275913	0.91[ASN][1000 genomes]
rs275932	1.00[ASN][1000 genomes]
rs275942	0.91[EUR][1000 genomes]
rs4883724	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4883725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4884507	0.84[EUR][1000 genomes]
rs4884521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498958	1.00[ASN][1000 genomes]
rs506695	0.91[ASN][1000 genomes]
rs536914	1.00[ASN][1000 genomes]
rs556065	0.91[ASN][1000 genomes]
rs563389	0.91[ASN][1000 genomes]
rs56890343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs589325	0.91[ASN][1000 genomes]
rs590719	0.91[ASN][1000 genomes]
rs7335738	1.00[ASN][1000 genomes]
rs74087239	0.91[ASN][1000 genomes]
rs74087241	0.88[ASN][1000 genomes]
rs7998209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9564106	0.84[EUR][1000 genomes]
rs9564107	0.84[EUR][1000 genomes]
rs9564124	0.97[ASN][1000 genomes]
rs9571013	0.84[EUR][1000 genomes]
rs9571014	0.84[EUR][1000 genomes]
rs9571019	0.84[EUR][1000 genomes]
rs9571074	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9571078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2756457	chr13:64244499-64497199	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv870276	chr13:64287557-64424570	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900323	chr13:64290980-64513203	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1051772	chr13:64301592-64419179	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1042787	chr13:64301592-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2754198	chr13:64303507-64424251	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1046923	chr13:64321869-64419179	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1048045	chr13:64321869-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1036453	chr13:64329019-64430033	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1044100	chr13:64344469-64419179	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1046914	chr13:64344469-64419543	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv900331	chr13:64346536-64450375	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv832633	chr13:64385305-64521487	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1046038	chr13:64405310-64500692	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv976127	chr13:64407800-64424929	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv900332	chr13:64411616-64856866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	esv2829984	chr13:64412839-64517258	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv561964	chr13:64412839-64967458	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64415600-64418200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:64415600-64419000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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