Variant report

Variant	rs275942
Chromosome Location	chr13:64484883-64484884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12427493	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12428552	0.87[ASN][1000 genomes]
rs12428562	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12428922	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12429666	0.91[EUR][1000 genomes]
rs1591483	0.87[ASN][1000 genomes]
rs17073496	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17073668	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17074073	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17080457	0.87[ASN][1000 genomes]
rs17324425	0.87[ASN][1000 genomes]
rs183919	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932376	0.87[ASN][1000 genomes]
rs2050477	0.91[EUR][1000 genomes]
rs2050479	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2171866	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2324486	0.87[ASN][1000 genomes]
rs275913	0.87[ASN][1000 genomes]
rs41382744	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4512976	0.87[ASN][1000 genomes]
rs4883725	0.91[EUR][1000 genomes]
rs4884521	0.91[EUR][1000 genomes]
rs4884529	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs506695	0.87[ASN][1000 genomes]
rs556065	0.87[ASN][1000 genomes]
rs563389	0.87[ASN][1000 genomes]
rs56890343	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs589325	0.87[ASN][1000 genomes]
rs590719	0.87[ASN][1000 genomes]
rs7322811	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73501843	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73505515	0.87[ASN][1000 genomes]
rs73505516	0.87[ASN][1000 genomes]
rs74087239	0.87[ASN][1000 genomes]
rs74087241	0.84[ASN][1000 genomes]
rs7998209	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9571073	0.91[EUR][1000 genomes]
rs9571074	0.83[EUR][1000 genomes]
rs9571078	0.91[EUR][1000 genomes]
rs9943950	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756457	chr13:64244499-64497199	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv900323	chr13:64290980-64513203	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv832633	chr13:64385305-64521487	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1046038	chr13:64405310-64500692	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900332	chr13:64411616-64856866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2829984	chr13:64412839-64517258	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv561964	chr13:64412839-64967458	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1044946	chr13:64419179-64937470	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1038291	chr13:64424127-64937470	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1047229	chr13:64424127-64962138	Enhancers Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1037078	chr13:64424251-64937470	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1036164	chr13:64425528-64933932	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv900333	chr13:64432922-64546757	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv900334	chr13:64432922-64591709	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv516171	chr13:64432922-64936243	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1041541	chr13:64446654-64913526	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv541807	chr13:64446654-64913526	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv994983	chr13:64446655-64913525	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv916348	chr13:64446759-64913520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv900335	chr13:64455165-64558878	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv455915	chr13:64455165-64933618	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv561966	chr13:64455165-64933618	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv482659	chr13:64457132-64634096	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64483800-64485400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr13:64484000-64485400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:64484200-64485000	Enhancers	Fetal Muscle Leg	muscle
4	chr13:64484200-64485400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:64484600-64485000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:64484600-64485000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:64484600-64485000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:64484600-64485000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr13:64484600-64485000	Enhancers	Fetal Brain Male	brain
10	chr13:64484800-64485000	Flanking Active TSS	Brain Anterior Caudate	brain
11	chr13:64484800-64485000	Flanking Active TSS	Brain Cingulate Gyrus	brain

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