Variant report

Variant	rs1810571
Chromosome Location	chr6:131092031-131092032
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1032614	0.83[EUR][1000 genomes]
rs10782243	0.86[EUR][1000 genomes]
rs11154601	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1304702	0.85[EUR][1000 genomes]
rs1497886	0.83[EUR][1000 genomes]
rs1810572	0.86[EUR][1000 genomes]
rs1876544	0.86[EUR][1000 genomes]
rs2326984	0.86[EUR][1000 genomes]
rs4141510	0.86[EUR][1000 genomes]
rs4141511	0.86[EUR][1000 genomes]
rs4386835	0.83[EUR][1000 genomes]
rs4897457	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4897461	0.86[EUR][1000 genomes]
rs6569704	0.86[EUR][1000 genomes]
rs6912807	0.86[EUR][1000 genomes]
rs6913229	0.86[EUR][1000 genomes]
rs6914139	0.85[EUR][1000 genomes]
rs6933145	0.86[EUR][1000 genomes]
rs6941868	0.85[EUR][1000 genomes]
rs728263	0.99[ASN][1000 genomes]
rs761836	0.86[EUR][1000 genomes]
rs761837	0.86[EUR][1000 genomes]
rs761838	0.86[EUR][1000 genomes]
rs761839	0.86[EUR][1000 genomes]
rs7756777	0.86[EUR][1000 genomes]
rs7757231	0.86[EUR][1000 genomes]
rs9321253	0.86[EUR][1000 genomes]
rs9385556	0.83[EUR][1000 genomes]
rs9388835	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs975497	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025019	chr6:131074711-131116070	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604665	chr6:131077027-131115817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604666	chr6:131078180-131122295	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131091000-131099400	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links