Variant report
| Variant | rs11154601 |
|---|---|
| Chromosome Location | chr6:131053625-131053626 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1032614 | 0.86[EUR][1000 genomes] |
| rs10457556 | 0.99[ASN][1000 genomes] |
| rs10782243 | 0.84[EUR][1000 genomes] |
| rs1304702 | 0.84[EUR][1000 genomes] |
| rs1497885 | 0.99[ASN][1000 genomes] |
| rs1497886 | 0.85[EUR][1000 genomes] |
| rs1810571 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1810572 | 0.84[EUR][1000 genomes] |
| rs1876544 | 0.84[EUR][1000 genomes] |
| rs2326984 | 0.83[EUR][1000 genomes] |
| rs4141510 | 0.84[EUR][1000 genomes] |
| rs4141511 | 0.84[EUR][1000 genomes] |
| rs4386835 | 0.85[EUR][1000 genomes] |
| rs4897457 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4897461 | 0.84[EUR][1000 genomes] |
| rs6569704 | 0.84[EUR][1000 genomes] |
| rs6912807 | 0.83[EUR][1000 genomes] |
| rs6913229 | 0.83[EUR][1000 genomes] |
| rs6914139 | 0.85[EUR][1000 genomes] |
| rs6933145 | 0.84[EUR][1000 genomes] |
| rs6941868 | 0.85[EUR][1000 genomes] |
| rs7453134 | 0.99[ASN][1000 genomes] |
| rs761836 | 0.83[EUR][1000 genomes] |
| rs761837 | 0.83[EUR][1000 genomes] |
| rs761838 | 0.83[EUR][1000 genomes] |
| rs761839 | 0.83[EUR][1000 genomes] |
| rs7756777 | 0.83[EUR][1000 genomes] |
| rs7757231 | 0.83[EUR][1000 genomes] |
| rs7772332 | 0.81[EUR][1000 genomes] |
| rs9321253 | 0.84[EUR][1000 genomes] |
| rs9385556 | 0.85[EUR][1000 genomes] |
| rs9388835 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs975497 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533971 | chr6:130490694-131172051 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv830806 | chr6:130938330-131107137 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv604664 | chr6:131004998-131115817 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv3428065 | chr6:131052463-131055359 | Enhancers Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:131051600-131059000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr6:131053000-131054000 | Enhancers | Ovary | ovary |
| 3 | chr6:131053600-131054000 | Active TSS | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
