Variant report

Variant	rs7772332
Chromosome Location	chr6:131033287-131033288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1032614	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10782243	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11154601	0.81[EUR][1000 genomes]
rs1304702	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1497886	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1810572	0.88[EUR][1000 genomes]
rs1876544	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2030023	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2326984	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4141510	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4141511	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4386835	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4897457	0.81[EUR][1000 genomes]
rs4897461	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6569704	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6912807	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6913229	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6914139	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6933145	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6941868	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs761836	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs761837	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs761838	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs761839	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7756777	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7757231	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9321253	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9385556	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9388835	0.80[EUR][1000 genomes]
rs975497	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131029600-131034200	Weak transcription	Fetal Kidney	kidney
2	chr6:131029800-131034200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131029800-131034600	Weak transcription	Fetal Stomach	stomach
4	chr6:131029800-131035000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:131030000-131037200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:131032000-131035600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:131032200-131034200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:131032200-131035400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:131032200-131035800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:131032400-131034200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:131032400-131034200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:131032400-131034200	Weak transcription	Fetal Brain Male	brain
13	chr6:131032400-131035200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:131032600-131033600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:131032600-131034200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:131032800-131033600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:131032800-131035200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:131032800-131035400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:131033200-131036800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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