Variant report

Variant	rs1497886
Chromosome Location	chr6:131030056-131030057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1032614	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10782243	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11154601	0.85[EUR][1000 genomes]
rs1304702	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1810571	0.83[EUR][1000 genomes]
rs1810572	0.94[EUR][1000 genomes]
rs1876544	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2030023	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2030024	1.00[YRI][hapmap]
rs2326984	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4141510	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4141511	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4386835	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897457	0.85[EUR][1000 genomes]
rs4897461	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569704	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6912807	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6913229	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6914139	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6933145	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6941868	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs761836	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs761837	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs761838	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs761839	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7756777	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7757231	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7772332	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9321253	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9375760	1.00[YRI][hapmap]
rs9375761	1.00[YRI][hapmap]
rs9385556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9388835	0.84[EUR][1000 genomes]
rs9402268	1.00[YRI][hapmap]
rs975497	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131029000-131030200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:131029200-131030200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:131029200-131030200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:131029200-131030200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:131029600-131030200	Bivalent Enhancer	HUVEC	blood vessel
6	chr6:131029600-131031400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:131029600-131034200	Weak transcription	Fetal Kidney	kidney
8	chr6:131029800-131032200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:131029800-131032400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:131029800-131034200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:131029800-131034600	Weak transcription	Fetal Stomach	stomach
12	chr6:131029800-131035000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:131030000-131030200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:131030000-131032200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:131030000-131032800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:131030000-131037200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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