Variant report

Variant	rs182104341
Chromosome Location	chr11:66113198-66113199
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr11:66112179-66113232	A549	lung:	n/a	n/a
2	MXI1	chr11:66111872-66113233	IMR90	lung:	n/a	chr11:66112666-66112681
3	MXI1	chr11:66111866-66113207	SK-N-SH	brain:	n/a	chr11:66112666-66112681
4	REST	chr11:66112181-66113240	A549	lung:	n/a	chr11:66112807-66112820
5	BRCA1	chr11:66112335-66113229	Hela-S3	cervix:	n/a	n/a
6	CUX1	chr11:66113029-66113259	GM12878	blood:	n/a	n/a
7	HCFC1	chr11:66111716-66113965	Hela-S3	cervix:	n/a	n/a
8	SIX5	chr11:66112201-66113459	A549	lung:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65625352..65628744-chr11:66111177..66113723,3	K562	blood:
2	chr11:66055270..66057597-chr11:66112530..66115409,2	K562	blood:
3	chr11:66108426..66118730-chr11:66133678..66141000,25	MCF-7	breast:
4	chr11:66112568..66115991-chr11:66232682..66235735,3	K562	blood:
5	chr11:66056831..66061115-chr11:66109718..66114909,6	MCF-7	breast:
6	chr11:66077239..66082197-chr11:66111995..66115447,5	MCF-7	breast:
7	chr11:66111080..66113877-chr17:56707692..56710441,2	MCF-7	breast:
8	chr11:66103854..66118324-chr11:66119048..66141728,55	K562	blood:
9	chr11:66079011..66083261-chr11:66109999..66114385,7	MCF-7	breast:
10	chr11:66111992..66114342-chr11:66382242..66384308,3	MCF-7	breast:

No data

Variant related genes	Relation type
BRMS1	TF binding region
ENSG00000255468	TF binding region
ENSG00000174547	Chromatin interaction
ENSG00000179292	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000199325	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000174669	Chromatin interaction
ENSG00000254458	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000174851	Chromatin interaction
ENSG00000248643	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
6	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	nsv897781	chr11:66095967-66116911	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	nsv897782	chr11:66099222-66116911	Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv897783	chr11:66107527-66118676	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv897784	chr11:66111901-66123043	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv897785	chr11:66112574-66123043	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66111200-66115000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:66111400-66113200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:66111600-66113200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr11:66111600-66113200	Flanking Active TSS	Stomach Smooth Muscle	stomach
5	chr11:66111600-66114600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr11:66112000-66113200	Active TSS	Gastric	stomach
7	chr11:66112000-66113600	Active TSS	Ovary	ovary
8	chr11:66112200-66113200	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:66112400-66113400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:66112600-66113600	Flanking Active TSS	Fetal Muscle Leg	muscle
11	chr11:66112600-66114000	Flanking Active TSS	Fetal Brain Male	brain
12	chr11:66112600-66114200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr11:66112600-66114600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:66112600-66115000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr11:66112600-66115000	Flanking Active TSS	Dnd41	blood
16	chr11:66112800-66113200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:66112800-66113200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:66112800-66113200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr11:66112800-66113200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr11:66112800-66113200	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr11:66112800-66113200	Flanking Active TSS	Thymus	Thymus
22	chr11:66112800-66113200	Flanking Active TSS	HepG2	liver
23	chr11:66112800-66113200	Flanking Active TSS	NH-A	brain
24	chr11:66112800-66113400	Flanking Active TSS	Liver	Liver
25	chr11:66112800-66113400	Flanking Active TSS	HSMMtube	muscle
26	chr11:66112800-66113600	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr11:66112800-66113600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
28	chr11:66112800-66113600	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
29	chr11:66112800-66113600	Flanking Active TSS	NHDF-Ad	bronchial
30	chr11:66112800-66113600	Flanking Active TSS	NHEK	skin
31	chr11:66112800-66113800	Flanking Active TSS	Fetal Heart	heart
32	chr11:66112800-66114000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:66112800-66114000	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr11:66112800-66114000	Flanking Active TSS	Hela-S3	cervix
35	chr11:66112800-66114200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:66112800-66114200	Flanking Active TSS	Brain Angular Gyrus	brain
37	chr11:66112800-66114400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:66112800-66114400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:66112800-66114400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
40	chr11:66112800-66114400	Flanking Active TSS	Colon Smooth Muscle	Colon
41	chr11:66112800-66114400	Flanking Active TSS	Fetal Intestine Large	intestine
42	chr11:66112800-66114400	Flanking Active TSS	Fetal Lung	lung
43	chr11:66112800-66114400	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr11:66112800-66114600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:66112800-66114600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:66112800-66114600	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr11:66112800-66114600	Flanking Active TSS	Brain Substantia Nigra	brain
48	chr11:66112800-66114600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr11:66112800-66114600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr11:66112800-66114600	Enhancers	Spleen	Spleen

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