Variant report

Variant	rs1821629
Chromosome Location	chr2:178923358-178923359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178922065..178924080-chr2:178924770..178926720,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10198111	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1020010	0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10211367	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs10930820	0.88[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10930822	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11674668	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs12472886	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs12473461	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12477170	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs12478277	0.80[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12478848	0.93[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs12618606	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs12621562	0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12990719	0.91[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs13030747	0.85[ASN][1000 genomes]
rs1347441	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1527286	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1527287	0.90[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1527293	0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1527294	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1527295	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1527296	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1534289	0.90[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1546813	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1554776	0.85[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17636610	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs17687590	0.80[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17687668	0.92[ASN][1000 genomes]
rs1830209	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1836672	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1852496	0.88[ASN][1000 genomes]
rs1852497	0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1852499	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1982131	0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1991994	0.94[ASN][1000 genomes]
rs2009303	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2060490	0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2060491	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2117738	0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2117740	0.80[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs4335982	0.90[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4567975	0.88[ASN][1000 genomes]
rs4893844	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs4893994	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4893995	0.88[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62183413	0.88[ASN][1000 genomes]
rs62185279	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6433709	0.85[CEU][hapmap]
rs6433710	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs6709256	0.81[CEU][hapmap]
rs6726809	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6750869	0.80[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs6758442	0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs744397	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs744398	0.90[ASN][1000 genomes]
rs7570423	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7608073	0.86[CEU][hapmap]
rs764780	0.85[ASN][1000 genomes]
rs934568	0.90[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9679090	0.90[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178922600-178923800	Weak transcription	Pancreas	Pancrea

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