Variant report

Variant	rs10198111
Chromosome Location	chr2:178933535-178933536
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178932912..178934541-chr2:178939711..178942332,2	K562	blood:
2	chr2:178929469..178931467-chr2:178932896..178934478,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10176475	0.88[CHB][hapmap]
rs10930822	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674668	0.95[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11677176	0.82[ASN][1000 genomes]
rs11687117	0.86[JPT][hapmap]
rs11695452	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11886139	0.82[CHB][hapmap]
rs11887974	0.88[CHB][hapmap]
rs11899905	0.88[CHB][hapmap]
rs12990719	0.90[CEU][hapmap]
rs13408924	0.82[CHB][hapmap]
rs1347441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1369515	0.88[CHB][hapmap]
rs1369517	0.82[CHB][hapmap]
rs1527286	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs1527287	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1534289	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs1554776	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs1821629	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1836672	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs1852501	0.82[ASN][1000 genomes]
rs1852502	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1852503	0.86[JPT][hapmap]
rs1880916	0.86[JPT][hapmap]
rs2043547	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs2060491	0.82[EUR][1000 genomes]
rs2163647	0.82[CHB][hapmap]
rs2217838	0.88[CHB][hapmap]
rs2695101	0.82[JPT][hapmap]
rs2695109	0.86[JPT][hapmap]
rs2695115	0.86[JPT][hapmap]
rs2695730	0.86[JPT][hapmap]
rs2695737	0.86[JPT][hapmap]
rs2695757	0.80[JPT][hapmap]
rs4300869	0.82[CHB][hapmap]
rs4335982	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs4893994	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs4893995	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs62183443	0.85[ASN][1000 genomes]
rs62183445	0.84[ASN][1000 genomes]
rs62185279	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6433709	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap]
rs6433710	0.90[CEU][hapmap]
rs6709256	0.89[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs6709343	0.88[CHB][hapmap]
rs6710329	0.88[CHB][hapmap]
rs6711886	0.82[ASN][1000 genomes]
rs6714047	0.88[CHB][hapmap]
rs6738461	0.84[CHB][hapmap]
rs6738831	0.93[JPT][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs6759109	0.81[JPT][hapmap]
rs736842	0.88[CHB][hapmap]
rs7583491	0.92[CHB][hapmap]
rs7588973	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7598623	0.93[JPT][hapmap]
rs7608073	0.95[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs9288014	0.88[CHB][hapmap]
rs934568	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs9679090	0.89[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178929200-178934200	Weak transcription	Fetal Intestine Small	intestine
2	chr2:178931600-178937000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:178932000-178934200	Weak transcription	Pancreas	Pancrea
4	chr2:178932000-178936600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:178932800-178934400	Weak transcription	HepG2	liver
6	chr2:178933200-178935600	Enhancers	K562	blood

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