Variant report

Variant	rs1852503
Chromosome Location	chr2:178815973-178815974
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178814531..178817473-chr2:178843941..178845448,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10198111	0.86[JPT][hapmap]
rs11674668	0.93[JPT][hapmap]
rs11677176	0.82[CEU][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11687117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11695452	0.88[CEU][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12473461	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs13030747	0.84[EUR][1000 genomes]
rs13386827	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs1347441	0.93[JPT][hapmap]
rs1438053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1438060	0.84[CEU][hapmap]
rs1438062	0.84[CEU][hapmap]
rs1438063	0.80[CEU][hapmap]
rs1546813	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs17329062	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs1852501	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1852502	0.88[CEU][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1866213	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1880916	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2043547	0.85[JPT][hapmap]
rs2573079	0.94[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs2573087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2695101	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2695107	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2695109	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs2695115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs2695728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2695730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2695731	0.87[JPT][hapmap]
rs2695737	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2695739	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2695757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap]
rs2886499	0.80[CEU][hapmap]
rs2886500	0.84[CEU][hapmap]
rs3770048	0.84[CEU][hapmap]
rs3821010	0.84[CEU][hapmap]
rs3910519	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs41440047	0.84[CEU][hapmap]
rs4324348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4413189	0.80[CEU][hapmap]
rs4446096	0.80[CEU][hapmap]
rs55889420	0.83[ASN][1000 genomes]
rs55943462	0.88[ASN][1000 genomes]
rs55962659	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62183411	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62183412	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62183443	0.98[EUR][1000 genomes]
rs62183445	0.98[EUR][1000 genomes]
rs6433698	0.84[CEU][hapmap]
rs6433709	0.92[JPT][hapmap]
rs6705118	0.83[CEU][hapmap]
rs6705472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6709256	0.93[JPT][hapmap]
rs6711886	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6720891	0.84[CEU][hapmap]
rs6723691	0.87[ASN][1000 genomes]
rs6724505	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs6738831	0.89[CEU][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6758473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6758543	0.84[CEU][hapmap]
rs6759109	0.80[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs744397	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs7557283	0.83[CEU][hapmap]
rs7568068	0.80[CEU][hapmap]
rs7570423	0.84[EUR][1000 genomes]
rs7570898	0.84[CEU][hapmap]
rs7581861	0.80[CEU][hapmap]
rs7588973	0.89[CEU][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7598623	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs7608073	0.93[JPT][hapmap]
rs764780	0.84[EUR][1000 genomes]
rs934802	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv3055	chr2:178800438-178819638	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2762296	chr2:178812726-178818029	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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