Variant report

Variant	rs1866213
Chromosome Location	chr2:178719202-178719203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178692507..178694140-chr2:178718717..178720458,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11674299	0.81[ASN][1000 genomes]
rs11677176	0.81[EUR][1000 genomes]
rs11687117	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11695452	0.81[EUR][1000 genomes]
rs13413635	0.81[ASN][1000 genomes]
rs1438053	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17329062	0.84[AFR][1000 genomes]
rs1852501	0.81[EUR][1000 genomes]
rs1852502	0.81[EUR][1000 genomes]
rs1880916	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2573087	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2695107	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2695728	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2695739	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3910519	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4324348	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889420	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55943462	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55962659	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62183411	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62183412	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62183443	0.80[EUR][1000 genomes]
rs62183445	0.81[EUR][1000 genomes]
rs62184549	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6705472	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6716496	0.82[ASN][1000 genomes]
rs6723691	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6738831	0.81[EUR][1000 genomes]
rs6758473	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6759109	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7558301	0.81[ASN][1000 genomes]
rs7588973	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv978954	chr2:178716893-178719864	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3322845	chr2:178717331-178719879	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3347800	chr2:178717656-178719704	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3403628	chr2:178718156-178719204	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178717000-178720600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:178717000-178720800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:178717400-178719400	Weak transcription	Adipose Nuclei	Adipose
4	chr2:178719200-178720000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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