Variant report

Variant	rs17329062
Chromosome Location	chr2:178670553-178670554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11674299	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11687117	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13386827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13409408	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13413635	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1370661	1.00[YRI][hapmap]
rs1438053	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1438063	0.80[CEU][hapmap]
rs1852502	0.82[CEU][hapmap]
rs1852503	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs1866213	0.84[AFR][1000 genomes]
rs1880916	0.87[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2573079	0.83[CEU][hapmap]
rs2695101	0.94[CHB][hapmap]
rs2695109	1.00[CHB][hapmap]
rs2695115	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2695730	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2695737	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2695757	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs2886499	0.80[CEU][hapmap]
rs2886500	0.84[CEU][hapmap]
rs3910519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3915272	1.00[YRI][hapmap]
rs4324348	0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4413189	0.80[CEU][hapmap]
rs4446096	0.80[CEU][hapmap]
rs55889420	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs55962659	0.81[AFR][1000 genomes]
rs62184549	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6705118	0.83[CEU][hapmap]
rs6705472	0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6715232	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6716496	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6724505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6758473	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6758543	0.84[CEU][hapmap]
rs6759109	0.80[CHB][hapmap]
rs7558301	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7568068	0.80[CEU][hapmap]
rs7570898	0.84[CEU][hapmap]
rs7581861	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178669400-178671800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:178670000-178670800	Enhancers	Adipose Nuclei	Adipose
3	chr2:178670200-178670800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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