Variant report

Variant	rs1438063
Chromosome Location	chr2:178695844-178695845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11687117	0.80[CEU][hapmap]
rs13424417	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1344922	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1344923	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1438053	0.84[CEU][hapmap]
rs1438060	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1438062	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs17329062	0.80[CEU][hapmap]
rs1852503	0.80[CEU][hapmap]
rs1946814	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2365895	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2695115	0.84[CEU][hapmap]
rs2695757	0.84[CEU][hapmap]
rs2886499	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2886500	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs3770048	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs3770051	0.81[JPT][hapmap]
rs3821010	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs41440047	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4324348	0.80[CEU][hapmap]
rs4413189	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4446096	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4522644	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6433698	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6705118	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6705472	0.80[CEU][hapmap]
rs6713981	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs6720891	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6724505	0.80[CEU][hapmap]
rs6736927	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6758473	0.84[CEU][hapmap]
rs6758543	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7557283	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7568068	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7570898	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7581861	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7595951	0.89[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs934802	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178694000-178696200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:178694800-178696400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:178695600-178696400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:178695800-178696200	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links