Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178687471..178690389-chr2:178693544..178695054,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10930812	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10930814	1.00[LWK][hapmap];0.82[AFR][1000 genomes]
rs13424417	0.87[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1344922	0.87[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs1370659	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1405646	0.90[LWK][hapmap];0.80[MEX][hapmap]
rs1435575	0.81[CEU][hapmap]
rs1438040	0.81[CHD][hapmap]
rs1438059	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1438063	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1534290	0.80[MEX][hapmap]
rs16865995	0.80[MEX][hapmap]
rs1946814	0.87[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs2037757	0.80[MEX][hapmap]
rs2695744	0.88[CEU][hapmap]
rs2886499	0.81[JPT][hapmap]
rs2886500	0.81[JPT][hapmap]
rs35611922	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3770051	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4143805	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4522644	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6433705	0.92[CEU][hapmap]
rs6718860	0.81[CHD][hapmap];0.86[TSI][hapmap]
rs6736927	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs6758543	0.80[CHB][hapmap]
rs934807	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1344923	SESTD1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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