Variant report

Variant	rs3770051
Chromosome Location	chr2:178696010-178696011
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10930812	0.88[ASN][1000 genomes]
rs10930814	1.00[CEU][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12463866	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13424417	0.82[JPT][hapmap]
rs1344922	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1344923	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1370659	0.91[ASN][1000 genomes]
rs1405643	0.96[CEU][hapmap]
rs1405644	0.96[CEU][hapmap]
rs1405646	1.00[CEU][hapmap];0.84[TSI][hapmap]
rs1435575	1.00[CEU][hapmap]
rs1438040	0.85[TSI][hapmap]
rs1438059	0.92[ASN][1000 genomes]
rs1438063	0.81[JPT][hapmap]
rs1534290	0.96[CEU][hapmap];0.82[TSI][hapmap]
rs16865995	0.96[CEU][hapmap];0.83[LWK][hapmap];0.82[TSI][hapmap]
rs1880915	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs1946814	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2037757	1.00[CEU][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2099476	0.96[CEU][hapmap]
rs2695094	0.89[CEU][hapmap];0.85[AMR][1000 genomes]
rs2695111	0.89[CEU][hapmap]
rs2695112	0.96[CEU][hapmap]
rs2695729	1.00[CEU][hapmap]
rs2695735	0.89[CEU][hapmap]
rs2695738	0.96[CEU][hapmap]
rs2695744	0.82[CEU][hapmap]
rs2886499	0.82[JPT][hapmap]
rs2886500	0.82[JPT][hapmap]
rs3108453	0.96[CEU][hapmap]
rs3108476	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4143805	0.90[ASN][1000 genomes]
rs4522644	0.82[JPT][hapmap]
rs6736927	0.82[JPT][hapmap]
rs6753870	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6758543	0.81[JPT][hapmap]
rs7573622	0.96[CEU][hapmap]
rs934807	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178694000-178696200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:178694800-178696400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:178695600-178696400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:178695800-178696200	Enhancers	Adipose Nuclei	Adipose

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