Variant report

Variant	rs6736927
Chromosome Location	chr2:178689688-178689689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178687471..178690389-chr2:178693544..178695054,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10169917	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10182386	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10930809	0.88[EUR][1000 genomes]
rs10930812	0.84[ASN][1000 genomes]
rs11884289	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13384016	0.84[EUR][1000 genomes]
rs13409414	0.87[EUR][1000 genomes]
rs13424417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1344922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344923	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1370659	0.86[ASN][1000 genomes]
rs1438059	0.88[ASN][1000 genomes]
rs1438060	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1438062	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1438063	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1946813	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1946814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2365895	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2365896	0.88[EUR][1000 genomes]
rs2365897	0.86[EUR][1000 genomes]
rs2573079	0.81[CEU][hapmap]
rs2886499	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2886500	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs3770048	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3770051	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs3821010	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4143805	0.85[ASN][1000 genomes]
rs41440047	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4413189	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4446096	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4522644	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6433697	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6433698	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6705118	0.94[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs6710818	0.83[EUR][1000 genomes]
rs6713981	0.95[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6714519	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6720891	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs6729216	0.87[EUR][1000 genomes]
rs6729482	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6739044	0.88[EUR][1000 genomes]
rs6758543	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7557283	0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7568068	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs7570898	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7581861	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs7595951	0.84[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs934800	0.88[EUR][1000 genomes]
rs934801	0.88[EUR][1000 genomes]
rs934802	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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