Variant report

Variant	rs2037757
Chromosome Location	chr2:178736065-178736066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10930814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11695211	0.86[JPT][hapmap]
rs12463866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12469439	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1344923	0.80[MEX][hapmap]
rs1369519	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1369520	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs1405643	0.96[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs1405644	0.96[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs1405645	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1405646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1435575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs1438040	0.92[MEX][hapmap]
rs1534290	0.96[CEU][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs16865995	0.96[CEU][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs16866042	0.92[CEU][hapmap];0.86[CHD][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs1880915	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap]
rs2020213	0.86[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs2099476	0.96[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs2217839	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2252726	0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap]
rs2573080	0.89[ASW][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap]
rs2573083	0.89[ASW][hapmap];0.83[CHB][hapmap];0.90[MKK][hapmap];0.91[YRI][hapmap]
rs2573085	0.82[CHD][hapmap];0.82[JPT][hapmap];0.93[MKK][hapmap]
rs2573088	0.89[ASW][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap]
rs2695094	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2695103	0.89[ASW][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.93[MKK][hapmap];0.84[YRI][hapmap]
rs2695104	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2695111	0.88[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2695112	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2695729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2695735	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.93[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs2695738	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2695743	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2695744	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap]
rs2695745	1.00[YRI][hapmap]
rs2695746	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2695747	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs2695750	0.89[ASW][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap]
rs2695752	0.82[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap]
rs2695754	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3108453	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3108476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3770051	1.00[CEU][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6433705	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6743194	0.96[CEU][hapmap]
rs6745288	0.86[JPT][hapmap]
rs6753870	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7573622	0.96[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs7604345	0.82[JPT][hapmap]
rs934807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs959157	0.92[CEU][hapmap];0.86[CHD][hapmap];1.00[MEX][hapmap]
rs959792	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs966433	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178733600-178736200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr2:178734400-178744800	Weak transcription	Psoas Muscle	Psoas
3	chr2:178735400-178738800	Weak transcription	Adipose Nuclei	Adipose

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