Variant report

Variant	rs2695750
Chromosome Location	chr2:178830559-178830560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10930814	0.86[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs11695211	0.83[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12463866	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.82[ASN][1000 genomes]
rs12469439	0.81[CHB][hapmap];0.87[ASN][1000 genomes]
rs12615720	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1369519	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1369520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1405646	0.87[CHB][hapmap];0.85[CHD][hapmap];0.87[ASN][1000 genomes]
rs1435575	0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs1821628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880915	0.89[ASW][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2020213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2037757	0.89[ASW][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap]
rs2217839	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2252726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2573080	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2573081	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2573083	1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap]
rs2573085	0.82[ASW][hapmap];0.83[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2573088	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2695094	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs2695103	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695104	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2695111	0.91[YRI][hapmap];0.83[ASN][1000 genomes]
rs2695112	0.89[ASW][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.83[ASN][1000 genomes]
rs2695729	0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2695735	0.89[ASW][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap]
rs2695738	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.83[ASN][1000 genomes]
rs2695743	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2695744	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2695745	0.91[YRI][hapmap]
rs2695746	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2695747	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2695752	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2695754	0.83[ASN][1000 genomes]
rs2695760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3108453	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs3108476	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs6433705	0.81[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6745288	0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7604345	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs934807	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs959792	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs966433	0.83[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv215311	chr2:178822646-178831927	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2695750	FKBP7	cis	parietal	SCAN
rs2695750	PRKRA	cis	parietal	SCAN
rs2695750	SP3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links