Variant report

Variant	rs959792
Chromosome Location	chr2:178847375-178847376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10930814	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs11695211	0.87[ASN][1000 genomes]
rs12463866	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12469439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12615720	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1369519	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1369520	0.82[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1405643	0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1405644	0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1405645	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs1405646	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1435575	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs1534290	0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16865995	0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16866042	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1821628	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1880915	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs2020213	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2037757	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs2099476	0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2217839	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs2252726	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs2573080	0.82[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2573081	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2573083	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs2573085	0.84[ASN][1000 genomes]
rs2573088	0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2695094	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs2695103	0.81[CHB][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2695104	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2695111	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2695112	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2695729	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2695735	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs2695738	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2695743	0.86[CHB][hapmap]
rs2695744	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2695745	1.00[YRI][hapmap]
rs2695746	0.87[CHB][hapmap]
rs2695747	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2695750	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2695752	1.00[YRI][hapmap]
rs2695754	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2695760	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3108453	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs3108476	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4893847	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62185280	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6433705	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6745288	0.87[ASN][1000 genomes]
rs6753870	0.82[ASN][1000 genomes]
rs7573622	0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs934807	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs959157	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3367225	chr2:178837494-178853153	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv17316	chr2:178837784-178847855	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv583694	chr2:178838521-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
9	nsv583703	chr2:178842129-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
10	nsv583705	chr2:178842802-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
11	nsv583707	chr2:178843589-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
12	esv1002532	chr2:178843814-178847898	Inactive region	Chromatin interactive region	n/a	n/a	diseases
13	esv997411	chr2:178843881-178847945	Inactive region	Chromatin interactive region	n/a	n/a	diseases
14	nsv583711	chr2:178843950-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
15	nsv583712	chr2:178843950-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv18858	chr2:178844005-178847499	Inactive region	Chromatin interactive region	n/a	n/a	diseases
17	nsv521228	chr2:178845469-178856900	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv583718	chr2:178845469-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv583731	chr2:178845755-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links