Variant report

Variant	rs2573083
Chromosome Location	chr2:178845469-178845470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10930814	0.82[CHB][hapmap]
rs11695211	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12463866	0.83[CHB][hapmap];0.91[YRI][hapmap]
rs12469439	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs12615720	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1369519	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1369520	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1405645	0.82[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1405646	0.83[CHB][hapmap];0.87[CHD][hapmap];0.89[ASN][1000 genomes]
rs1435575	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs1821628	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1880915	0.89[ASW][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs2020213	0.82[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs2037757	0.89[ASW][hapmap];0.83[CHB][hapmap];0.90[MKK][hapmap];0.91[YRI][hapmap]
rs2217839	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2252726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs2573080	1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2573081	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2573085	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.86[LWK][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2573088	1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2695094	0.83[CHB][hapmap];0.91[YRI][hapmap]
rs2695103	1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];0.81[TSI][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2695104	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2695111	0.91[YRI][hapmap]
rs2695112	0.89[ASW][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.91[YRI][hapmap]
rs2695729	0.83[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2695735	0.89[ASW][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.97[MKK][hapmap];0.91[YRI][hapmap]
rs2695738	0.83[CHB][hapmap];0.91[YRI][hapmap]
rs2695743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2695744	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs2695745	0.91[YRI][hapmap]
rs2695746	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2695747	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs2695750	1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap]
rs2695752	0.83[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs2695760	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3108453	0.83[CHB][hapmap];0.91[YRI][hapmap]
rs3108476	0.82[CHB][hapmap];0.83[YRI][hapmap]
rs6433705	0.86[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6745288	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7604345	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs934807	0.82[CHB][hapmap]
rs959792	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs966433	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3367225	chr2:178837494-178853153	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv17316	chr2:178837784-178847855	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv583692	chr2:178838191-178845628	Inactive region	Chromatin interactive region	n/a	n/a	diseases
9	nsv583694	chr2:178838521-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
10	nsv583697	chr2:178838881-178845755	Inactive region	Chromatin interactive region	n/a	n/a	diseases
11	nsv583698	chr2:178838881-178845909	Inactive region	Chromatin interactive region	n/a	n/a	diseases
12	nsv583703	chr2:178842129-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
13	nsv583704	chr2:178842802-178845962	Inactive region	Chromatin interactive region	n/a	n/a	diseases
14	nsv583705	chr2:178842802-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
15	nsv583706	chr2:178843589-178847300	Inactive region	Chromatin interactive region	n/a	n/a	diseases
16	nsv583707	chr2:178843589-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
17	esv1002532	chr2:178843814-178847898	Inactive region	Chromatin interactive region	n/a	n/a	diseases
18	esv997411	chr2:178843881-178847945	Inactive region	Chromatin interactive region	n/a	n/a	diseases
19	nsv583708	chr2:178843950-178847018	Inactive region	Chromatin interactive region	n/a	n/a	diseases
20	nsv583709	chr2:178843950-178847140	Inactive region	Chromatin interactive region	n/a	n/a	diseases
21	nsv583710	chr2:178843950-178847351	Inactive region	Chromatin interactive region	n/a	n/a	diseases
22	nsv583711	chr2:178843950-178847375	Inactive region	Chromatin interactive region	n/a	n/a	diseases
23	nsv583712	chr2:178843950-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv18858	chr2:178844005-178847499	Inactive region	Chromatin interactive region	n/a	n/a	diseases
25	nsv521228	chr2:178845469-178856900	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv583718	chr2:178845469-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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