Variant report

Variant	rs6758473
Chromosome Location	chr2:178711358-178711359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11674299	0.82[ASN][1000 genomes]
rs11677176	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs11687117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11695452	0.87[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs12473461	0.83[CEU][hapmap]
rs13386827	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13413635	0.82[ASN][1000 genomes]
rs1438053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1438060	0.88[CEU][hapmap]
rs1438062	0.88[CEU][hapmap]
rs1438063	0.84[CEU][hapmap]
rs1546813	0.82[CEU][hapmap]
rs17329062	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1852501	0.81[EUR][1000 genomes]
rs1852502	0.87[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs1852503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866213	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1880916	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1946814	0.83[CEU][hapmap]
rs2043547	0.87[JPT][hapmap]
rs2365895	0.83[CEU][hapmap]
rs2573079	0.94[CEU][hapmap];0.83[JPT][hapmap]
rs2573087	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2695101	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs2695107	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2695109	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2695115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2695728	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2695730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2695731	0.88[JPT][hapmap]
rs2695737	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2695739	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2695757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2886499	0.84[CEU][hapmap]
rs2886500	0.84[CEU][hapmap]
rs3770048	0.88[CEU][hapmap]
rs3821010	0.88[CEU][hapmap]
rs3910519	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41440047	0.88[CEU][hapmap]
rs4324348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4413189	0.84[CEU][hapmap]
rs4446096	0.84[CEU][hapmap]
rs4522644	0.82[CEU][hapmap]
rs55889420	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55943462	0.98[ASN][1000 genomes]
rs55962659	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62183411	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62183412	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62183443	0.80[EUR][1000 genomes]
rs62183445	0.81[EUR][1000 genomes]
rs62184549	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6433698	0.88[CEU][hapmap]
rs6433709	0.93[JPT][hapmap]
rs6705118	0.82[CEU][hapmap]
rs6705472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713981	0.84[CEU][hapmap]
rs6715232	0.81[ASN][1000 genomes]
rs6716496	0.84[ASN][1000 genomes]
rs6720891	0.88[CEU][hapmap]
rs6723691	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6724505	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6738831	0.88[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs6758543	0.84[CEU][hapmap]
rs6759109	0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs744397	0.82[CEU][hapmap]
rs7557283	0.88[CEU][hapmap]
rs7558301	0.82[ASN][1000 genomes]
rs7568068	0.84[CEU][hapmap]
rs7570898	0.84[CEU][hapmap]
rs7581861	0.84[CEU][hapmap]
rs7588973	0.88[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs7595951	0.82[CEU][hapmap]
rs7598623	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs7608073	0.94[JPT][hapmap]
rs934802	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3326967	chr2:178708956-178711454	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178699800-178716600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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