Variant report

Variant	rs62184549
Chromosome Location	chr2:178694990-178694991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11674299	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13409408	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13413635	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1438053	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17329062	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1866213	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1880916	0.82[ASN][1000 genomes]
rs3910519	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4324348	0.84[ASN][1000 genomes]
rs55889420	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55943462	0.84[ASN][1000 genomes]
rs55962659	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6705472	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6715232	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6716496	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6723691	0.83[ASN][1000 genomes]
rs6758473	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7558301	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178693600-178695800	Weak transcription	Adipose Nuclei	Adipose
2	chr2:178694000-178696200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:178694800-178696400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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