Variant report

Variant	rs11674299
Chromosome Location	chr2:178675183-178675184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13409408	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13413635	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438053	0.81[ASN][1000 genomes]
rs17329062	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1866213	0.81[ASN][1000 genomes]
rs3910519	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4324348	0.81[ASN][1000 genomes]
rs55889420	0.87[ASN][1000 genomes]
rs55943462	0.81[ASN][1000 genomes]
rs55962659	0.81[ASN][1000 genomes]
rs62184549	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6705472	0.82[ASN][1000 genomes]
rs6715232	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6716496	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6758473	0.82[ASN][1000 genomes]
rs7558301	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178671400-178677800	Weak transcription	Psoas Muscle	Psoas
2	chr2:178673000-178675200	Enhancers	Adipose Nuclei	Adipose
3	chr2:178673000-178675600	Enhancers	Fetal Intestine Large	intestine
4	chr2:178674200-178676000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:178674200-178681600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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