Variant report

Variant	rs7598623
Chromosome Location	chr2:178907960-178907961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10198111	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs10930822	0.87[ASN][1000 genomes]
rs11674668	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11677176	0.88[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11687117	0.83[CEU][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes]
rs11695452	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12473461	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs13030747	0.84[EUR][1000 genomes]
rs1347441	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1438053	0.82[CEU][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes]
rs1546813	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs1852501	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1852502	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1852503	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs1880916	0.81[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs2043547	0.93[JPT][hapmap]
rs2573079	0.89[EUR][1000 genomes]
rs2573087	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2695101	0.91[JPT][hapmap]
rs2695107	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2695109	0.93[JPT][hapmap]
rs2695115	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs2695728	0.97[EUR][1000 genomes]
rs2695730	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs2695731	0.81[JPT][hapmap]
rs2695737	0.93[JPT][hapmap]
rs2695739	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2695757	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs4324348	0.83[CEU][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes]
rs4893995	0.83[CEU][hapmap]
rs55962659	0.84[EUR][1000 genomes]
rs62183411	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62183412	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62183443	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62183445	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62185279	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6433709	1.00[JPT][hapmap]
rs6705472	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs6709256	1.00[JPT][hapmap]
rs6711886	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6738831	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6758473	0.82[CEU][hapmap];0.93[JPT][hapmap]
rs6759109	0.87[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs744397	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7570423	0.84[EUR][1000 genomes]
rs7588973	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7608073	1.00[JPT][hapmap]
rs764780	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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