Variant report

Variant	rs1830269
Chromosome Location	chr6:144993109-144993110
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2328595	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328597	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895647	0.84[EUR][1000 genomes]
rs4896735	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923481	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929638	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6929795	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9321983	0.85[EUR][1000 genomes]
rs9376832	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-144996400	Weak transcription	Pancreas	Pancrea
2	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
3	chr6:144982000-144996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:144982600-144996200	Weak transcription	HSMM	muscle
5	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
6	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
7	chr6:144984800-144996200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:144985000-145004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:144986200-145002000	Weak transcription	Small Intestine	intestine
10	chr6:144988600-144995800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:144990200-144995600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:144991000-144996200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:144992200-144993800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
14	chr6:144992600-144994000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:144992600-144994800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:144992800-144994200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:144993000-144996200	Weak transcription	Osteobl	bone
18	chr6:144993000-145000800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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