Variant report

Variant	rs9321983
Chromosome Location	chr6:144947272-144947273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1830269	0.85[EUR][1000 genomes]
rs2328595	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2328597	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4895647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896735	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6923481	0.87[EUR][1000 genomes]
rs6929638	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376832	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs951573	0.91[YRI][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
2	chr6:144914800-144960000	Weak transcription	Lung	lung
3	chr6:144929600-144955200	Weak transcription	HepG2	liver
4	chr6:144930000-144950200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:144930400-144957600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:144930800-144951800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:144930800-144957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:144931000-144958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:144939000-144949800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:144939000-144959200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:144939400-144949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:144941400-144951800	Weak transcription	Fetal Heart	heart
14	chr6:144943000-144947600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:144943600-144953800	Weak transcription	Gastric	stomach
16	chr6:144944200-144951200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:144946000-144949800	Weak transcription	Pancreas	Pancrea
18	chr6:144946000-144952200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:144946000-144961000	Weak transcription	Left Ventricle	heart
20	chr6:144946000-144965800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:144946400-144947400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:144946800-144947600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:144947000-144947400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:144947000-144964800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:144947000-144969200	Weak transcription	Fetal Kidney	kidney
26	chr6:144947200-144947600	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links