Variant report

Variant	rs4896735
Chromosome Location	chr6:144982326-144982327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1830269	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2328595	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2328597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895647	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6923481	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929638	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6929795	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9321983	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9376832	1.00[CEU][hapmap];0.91[CHD][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144965600-144982400	Weak transcription	HSMM	muscle
2	chr6:144977800-144985400	Weak transcription	Gastric	stomach
3	chr6:144978400-144982400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr6:144978400-144983800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:144978600-144983000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:144978600-144983000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:144978800-144988400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:144978800-144989800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:144979000-144983000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:144979800-144983600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:144979800-144985800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:144980000-144983000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:144980200-144982600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:144980200-144982600	Enhancers	Fetal Thymus	thymus
15	chr6:144980200-144982600	Enhancers	Right Atrium	heart
16	chr6:144980200-144982800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:144980200-144982800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:144980200-144982800	Enhancers	Osteobl	bone
19	chr6:144980200-144983000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:144980200-144983800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:144980400-144982400	Enhancers	Fetal Heart	heart
22	chr6:144980400-144982600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:144980400-144982600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:144980400-144982600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:144980400-144982600	Enhancers	Brain Anterior Caudate	brain
26	chr6:144980400-144982800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr6:144980400-144982800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:144980400-144982800	Enhancers	NH-A	brain
29	chr6:144980400-144983000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:144980400-144983000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:144980400-144983000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:144980400-144983200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:144980400-144985000	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:144980600-144983000	Flanking Active TSS	Fetal Lung	lung
35	chr6:144980600-144983200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:144980800-144982600	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr6:144980800-144982800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
38	chr6:144980800-144982800	Active TSS	H9 Cell Line	embryonic stem cell
39	chr6:144980800-144984200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:144980800-144989200	Weak transcription	Left Ventricle	heart
41	chr6:144981000-144982600	Enhancers	Brain Cingulate Gyrus	brain
42	chr6:144981000-144982600	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr6:144981000-144983000	Flanking Active TSS	Fetal Intestine Small	intestine
44	chr6:144981000-144983000	Active TSS	Rectal Smooth Muscle	rectum
45	chr6:144981200-144983000	Flanking Active TSS	Liver	Liver
46	chr6:144981200-144983000	Flanking Active TSS	HepG2	liver
47	chr6:144981200-144985000	Weak transcription	Thymus	Thymus
48	chr6:144981200-144986200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:144981200-144987000	Weak transcription	Spleen	Spleen
50	chr6:144981200-144996400	Weak transcription	Pancreas	Pancrea

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