Variant report

Variant	rs1832637
Chromosome Location	chr9:18494120-18494121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10511638	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511655	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511657	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10963615	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788016	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788507	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789771	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789989	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792038	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793618	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794163	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538735	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936729	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936798	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17205346	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17205381	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17205520	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17205912	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17206286	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17206601	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17206657	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17206965	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17207028	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17207294	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17799670	1.00[ASN][1000 genomes]
rs17801150	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17801409	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1832746	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2153419	0.84[EUR][1000 genomes]
rs7031222	0.90[EUR][1000 genomes]
rs725837	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv892689	chr9:18485434-18537444	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv892690	chr9:18485434-18592374	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18487400-18495600	Enhancers	Fetal Heart	heart
2	chr9:18490400-18509400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:18491200-18494200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:18491200-18494800	Weak transcription	Hela-S3	cervix
5	chr9:18491200-18495000	Enhancers	HSMMtube	muscle
6	chr9:18491200-18495200	Enhancers	NHDF-Ad	bronchial
7	chr9:18491200-18495400	Enhancers	NHEK	skin
8	chr9:18491200-18498400	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:18491400-18494600	Enhancers	HUVEC	blood vessel
10	chr9:18491400-18495600	Enhancers	HMEC	breast
11	chr9:18491400-18495600	Enhancers	NHLF	lung
12	chr9:18491400-18497000	Enhancers	NH-A	brain
13	chr9:18491600-18494400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:18491600-18494400	Enhancers	Osteobl	bone
15	chr9:18492000-18497600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:18492200-18495400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:18492400-18494400	Enhancers	HSMM	muscle
18	chr9:18492600-18494200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:18492600-18496800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:18492800-18494600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:18492800-18494600	Enhancers	Fetal Brain Male	brain
22	chr9:18492800-18498000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:18493200-18494400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:18493200-18495400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:18493400-18494200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:18493800-18494200	Enhancers	Aorta	Aorta
27	chr9:18493800-18496400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:18493800-18497000	Weak transcription	Fetal Lung	lung
29	chr9:18493800-18498600	Weak transcription	Colon Smooth Muscle	Colon
30	chr9:18493800-18502400	Weak transcription	Ovary	ovary
31	chr9:18494000-18494200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:18494000-18496400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:18494000-18497000	Weak transcription	Fetal Stomach	stomach
34	chr9:18494000-18501000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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