Variant report

Variant	rs2153419
Chromosome Location	chr9:18429484-18429485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511638	0.82[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10511655	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10511657	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10963615	0.85[EUR][1000 genomes]
rs11788016	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11788507	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11789771	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11789989	0.85[EUR][1000 genomes]
rs11792038	0.82[CEU][hapmap]
rs11793618	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11794163	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1538735	0.92[EUR][1000 genomes]
rs16936729	0.94[EUR][1000 genomes]
rs16936798	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs17205346	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17205381	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17205520	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17205912	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17206286	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17206601	0.81[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17206657	0.82[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17206965	0.82[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17207028	0.82[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17207294	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17799670	0.86[AMR][1000 genomes]
rs17801150	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17801409	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs1832637	0.84[EUR][1000 genomes]
rs1832746	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs7031222	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs725837	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7863523	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18427400-18431400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:18427600-18429800	Enhancers	NHDF-Ad	bronchial
3	chr9:18427600-18432800	Enhancers	Osteobl	bone
4	chr9:18427800-18431000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:18428600-18429600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:18428600-18430800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:18428800-18429600	Enhancers	Fetal Heart	heart
8	chr9:18428800-18429600	Enhancers	NHLF	lung
9	chr9:18429000-18437400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:18429200-18429600	Enhancers	Hela-S3	cervix
11	chr9:18429200-18430800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:18429400-18429600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:18429400-18430600	Weak transcription	Colon Smooth Muscle	Colon

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