Variant report

Variant	rs725837
Chromosome Location	chr9:18459169-18459170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511638	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs10511655	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10511657	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10963615	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11788016	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11788507	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11789771	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11789989	0.84[EUR][1000 genomes]
rs11792038	0.91[CEU][hapmap]
rs11793618	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11794163	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs1538735	0.91[EUR][1000 genomes]
rs16936729	0.93[EUR][1000 genomes]
rs16936798	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs17205346	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17205381	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17205520	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17205912	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17206286	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17206601	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17206657	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17206965	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17207028	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17207294	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17799670	0.87[AMR][1000 genomes]
rs17801150	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs17801409	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs1832637	0.83[EUR][1000 genomes]
rs1832746	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2153419	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7031222	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7863523	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18456800-18459600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:18456800-18459800	Enhancers	HUVEC	blood vessel
3	chr9:18457000-18459800	Enhancers	NHEK	skin
4	chr9:18457200-18461600	Enhancers	HMEC	breast
5	chr9:18457600-18460400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:18457800-18459400	Weak transcription	NH-A	brain
7	chr9:18457800-18463800	Weak transcription	NHLF	lung
8	chr9:18458000-18459200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:18458000-18459200	Weak transcription	Osteobl	bone
10	chr9:18458000-18459400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:18458000-18459600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:18458000-18463800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:18458200-18459200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:18458200-18459200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:18458200-18459400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:18458200-18460200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:18458600-18459800	Enhancers	HSMMtube	muscle
18	chr9:18458800-18459200	Weak transcription	Hela-S3	cervix
19	chr9:18458800-18459200	Weak transcription	NHDF-Ad	bronchial
20	chr9:18458800-18459600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:18459000-18459200	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links