Variant report

Variant	rs1834143
Chromosome Location	chr7:137383328-137383329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1019583	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10234581	0.82[CHB][hapmap]
rs12056089	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12707367	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1424370	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1424371	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs1723069	0.81[EUR][1000 genomes]
rs1991084	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2113428	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs270893	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs270894	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs270895	0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs270896	0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs270897	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs270898	0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs270899	0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs270900	0.81[EUR][1000 genomes]
rs270901	0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs270902	0.80[EUR][1000 genomes]
rs3778797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3778798	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3778799	0.86[ASN][1000 genomes]
rs3800624	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3800626	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3800636	0.82[JPT][hapmap]
rs3800637	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs3800644	0.81[JPT][hapmap]
rs3823552	0.82[ASN][1000 genomes]
rs4728420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4732263	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs4732264	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs6944527	0.81[JPT][hapmap]
rs6948537	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6957797	0.81[JPT][hapmap]
rs6971978	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6976725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7457119	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7806658	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7806810	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs9784934	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137370800-137384600	Weak transcription	Fetal Brain Female	brain
2	chr7:137374000-137387400	Weak transcription	Aorta	Aorta
3	chr7:137379200-137383800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:137380200-137388000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:137381000-137385000	Weak transcription	Brain Substantia Nigra	brain
6	chr7:137381000-137388000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:137381200-137385600	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:137382200-137389200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:137382400-137387800	Weak transcription	Muscle Satellite Cultured Cells	--

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